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NC_042114.1__YP_009623601.1__FDJ39_gp19__00019
Bact-VirNC_042114.1__YP_009623601.1__FDJ39_gp19__00019
Identity
- Accession:
- NC_042114 ↗
- Kingdom:
- phage
Quality
69.5
mean pLDDT
Taxonomy
TaxID: 10748
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-161
Domain cluster:
rep: NC_049930.1__YP_009908777.1__H3T63_gp12__00012__D503-665
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05257.23 best | CHAP | 28.1 | 3.30e-06 | 73.2% | 92.6% |
D2
high
residues 205-336_508-525
Domain cluster:
rep: NC_048740.1__YP_009842188.1__HWB96_gp13__00013__D309-427_623-641
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF20934.4 best | phi29_gp9_C | 30.6 | 3.60e-07 | 70.7% | 22.4% |
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3l5iA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.65 | 32.0 | 3.99e-01 | 100.0% | 76.1% |
| 7y8sB03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.64 | 31.0 | 3.95e-01 | 98.7% | 79.8% |
| 6vtmB00 | 3.10.20.120 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.62 | 31.0 | 3.83e-01 | 97.3% | 75.0% |
| 6gszA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 32.0 | 3.81e-01 | 98.7% | 73.5% |
| 4o1nD01 | 3.10.20.120 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.61 | 31.0 | 3.51e-01 | 97.3% | 62.6% |
| 1yn3A00 | 3.10.20.120 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.61 | 31.0 | 3.73e-01 | 100.0% | 73.5% |
| 3cawA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.57 | 32.0 | 4.03e-01 | 92.7% | 91.2% |
| 2v1yA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.55 | 27.0 | 3.34e-01 | 95.3% | 73.0% |
| 6julA02 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.54 | 33.0 | 3.94e-01 | 100.0% | 92.7% |
| 1unnC00 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.54 | 33.0 | 3.67e-01 | 100.0% | 79.3% |
| 1et9A01 | 3.10.20.120 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.53 | 29.0 | 3.37e-01 | 96.0% | 71.8% |
| 2prxA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.53 | 34.0 | 3.78e-01 | 86.0% | 83.3% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1117749 | 3367.1.1.1 ↗ | beta complex topology › C-terminal domain in bacteriophage C1 tail knob protein, gp12 › C-terminal domain in bacteriophage C1 tail knob protein, gp12 › C-terminal domain in bacteriophage C1 tail knob protein, gp12 › phi29_gp9_C | 0.61 | 53.0 | 3.85e-01 | 100.0% | 35.7% |
| 4033546 | 221.1.1.20 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › MAP | 0.61 | 32.0 | 3.64e-01 | 100.0% | 67.3% |
| 337177 | 218.1.1.6 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › OSBS_N | 0.60 | 31.0 | 4.01e-01 | 85.3% | 88.0% |
| 4155354 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.59 | 35.0 | 3.87e-01 | 100.0% | 71.7% |
| 4265395 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.58 | 35.0 | 3.95e-01 | 100.0% | 77.4% |
| 4647537 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.55 | 32.0 | 3.64e-01 | 100.0% | 76.4% |
| 3194295 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.55 | 33.0 | 3.63e-01 | 100.0% | 72.0% |
| 3032092 | 221.1.1.20 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › MAP | 0.55 | 29.0 | 3.25e-01 | 99.3% | 63.2% |
| 3965278 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.54 | 33.0 | 3.76e-01 | 100.0% | 80.9% |
| 3208198 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.54 | 33.0 | 3.60e-01 | 100.0% | 72.0% |
| 5045701 | 221.1.3.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Sulfite oxidase, middle catalytic domain | 0.53 | 34.0 | 3.61e-01 | 97.3% | 71.1% |
| 3573883 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.51 | 33.0 | 3.63e-01 | 100.0% | 80.0% |
D3
high
residues 535-595