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NC_042116.1__YP_009623647.1__FDJ41_gp037__00037
Bact-VirNC_042116.1__YP_009623647.1__FDJ41_gp037__00037
Identity
- Accession:
- NC_042116 ↗
- Kingdom:
- phage
Quality
91.0
mean pLDDT
Taxonomy
TaxID: 2052742
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 25-145
Domain cluster:
representative
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1jlcB03 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.73 | 26.0 | 2.58e-01 | 90.9% | 30.1% |
| 3pqhA01 | 2.20.220.20 | Mainly Beta › Single Sheet › Glycosyl hydrolase fold › | 0.73 | 36.0 | 4.99e-01 | 71.9% | 96.7% |
| 2af5A02 | 3.90.930.1 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › | 0.68 | 49.0 | 4.71e-01 | 75.2% | 87.0% |
| 1iwmA00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.59 | 45.0 | 3.92e-01 | 97.5% | 53.7% |
| 3lxqA01 | 3.30.1120.80 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.57 | 35.0 | 3.83e-01 | 85.1% | 74.7% |
| 4nkbA01 | 3.30.1120.120 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.55 | 44.0 | 4.51e-01 | 97.5% | 89.5% |
| 3fzxA00 | 2.40.360.20 | Mainly Beta › Beta Barrel › YmcC-like fold › | 0.55 | 47.0 | 3.96e-01 | 96.7% | 86.8% |
| 3cc1A02 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.53 | 30.0 | 3.48e-01 | 90.1% | 76.1% |
| 4i8oA02 | 3.30.160.690 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Bacterial toxin RNase RnlA/LsoA, N repeated domain | 0.52 | 32.0 | 3.64e-01 | 91.7% | 81.1% |
| 2xe4A02 | 2.130.10.120 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain | 0.52 | 42.0 | 3.09e-01 | 89.3% | 87.8% |
| 3mh9A00 | 2.50.20.20 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › | 0.52 | 34.0 | 2.92e-01 | 97.5% | 40.0% |
| 3o14A00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.52 | 41.0 | 3.41e-01 | 85.1% | 84.2% |
| 3pquA02 | 2.40.160.90 | Mainly Beta › Beta Barrel › Porin › | 0.51 | 39.0 | 3.49e-01 | 81.0% | 93.8% |
| 3htyA00 | 2.40.128.280 | Mainly Beta › Beta Barrel › Lipocalin › | 0.51 | 31.0 | 3.48e-01 | 97.5% | 77.7% |
| 1i3zA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.50 | 33.0 | 3.55e-01 | 91.7% | 78.6% |
| 4ifaA01 | 3.40.33.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP | 0.50 | 44.0 | 3.40e-01 | 97.5% | 58.4% |
ECOD (41)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5018923 | 809.2.1.0 ↗ | a+b two layers › BLIP-like › BT0923-like › BT0923-like | 0.74 | 29.0 | 3.65e-01 | 92.6% | 58.7% |
| 4946049 | 79.1.1.0 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain | 0.72 | 46.0 | 5.52e-01 | 93.4% | 97.5% |
| 3617898 | 79.1.1.0 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain | 0.70 | 44.0 | 4.16e-01 | 73.6% | 53.1% |
| 4031984 | 3894.1.1.1 ↗ | beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › Asp1 | 0.67 | 47.0 | 4.68e-01 | 71.9% | 90.4% |
| 3273142 | 77.1.1.0 ↗ | beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein | 0.64 | 43.0 | 3.17e-01 | 76.9% | 27.1% |
| 3210934 | 77.3.1.7 ↗ | beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › PF31062 | 0.63 | 40.0 | 4.32e-01 | 74.4% | 73.3% |
| 4057793 | 71.1.1.3 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB | 0.63 | 45.0 | 4.07e-01 | 97.5% | 54.5% |
| 3924523 | 844.1.1.0 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain | 0.63 | 53.0 | 4.36e-01 | 90.1% | 94.3% |
| 3224446 | 844.1.1.0 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain | 0.62 | 52.0 | 4.37e-01 | 90.1% | 93.7% |
| 3994621 | 844.1.1.0 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain | 0.62 | 52.0 | 4.29e-01 | 90.1% | 91.6% |
| 3256681 | 77.3.1.0 ↗ | beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain | 0.61 | 49.0 | 3.48e-01 | 85.1% | 32.2% |
| 5046573 | 844.1.1.2 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR | 0.61 | 54.0 | 4.94e-01 | 98.3% | 96.2% |
| 4127270 | 71.1.1.3 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB | 0.61 | 45.0 | 3.96e-01 | 97.5% | 53.4% |
| 3920826 | 844.1.1.4 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Scramblase | 0.60 | 51.0 | 4.55e-01 | 92.6% | 100.0% |
| 3263006 | 844.1.1.2 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR | 0.60 | 52.0 | 4.77e-01 | 95.9% | 95.0% |
| 4298074 | 71.1.1.3 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB | 0.60 | 44.0 | 3.86e-01 | 97.5% | 52.6% |
| 4975453 | 844.1.1.2 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR | 0.59 | 51.0 | 4.63e-01 | 95.9% | 92.9% |
| 4301684 | 71.1.1.3 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB | 0.59 | 45.0 | 3.90e-01 | 97.5% | 52.5% |
| 4347651 | 71.1.1.3 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB | 0.59 | 45.0 | 3.92e-01 | 99.2% | 52.4% |
| 3263745 | 844.1.1.0 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain | 0.59 | 52.0 | 4.74e-01 | 97.5% | 86.0% |
| 3574513 | 5084.5.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin | 0.58 | 46.0 | 3.95e-01 | 84.3% | 63.6% |
| 4083603 | 71.1.1.3 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB | 0.58 | 44.0 | 3.99e-01 | 98.3% | 58.2% |
| 5046458 | 844.1.1.2 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR | 0.58 | 52.0 | 4.59e-01 | 99.2% | 94.9% |
| 3827447 | 844.1.1.2 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR | 0.58 | 50.0 | 4.27e-01 | 95.0% | 88.7% |
| 4188272 | 71.1.1.3 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB | 0.58 | 45.0 | 4.08e-01 | 97.5% | 62.3% |
| 3923484 | 4291.1.1.1 ↗ | beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP | 0.58 | 51.0 | 3.69e-01 | 99.2% | 75.6% |
| 3635423 | 844.1.1.0 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain | 0.57 | 51.0 | 4.46e-01 | 99.2% | 81.6% |
| 1146605 | 71.1.1.3 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB | 0.57 | 45.0 | 3.92e-01 | 97.5% | 55.6% |
| 4380974 | 71.1.1.3 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB | 0.56 | 46.0 | 4.18e-01 | 100.0% | 65.6% |
| 3246548 | 844.1.1.0 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain | 0.54 | 46.0 | 4.10e-01 | 92.6% | 78.3% |
| 4980820 | 844.1.1.2 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR | 0.54 | 47.0 | 4.13e-01 | 95.0% | 93.3% |
| 3926611 | 5.1.4.220 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR35_2nd | 0.54 | 43.0 | 3.22e-01 | 86.0% | 66.3% |
| 3748485 | 6129.1.1.1 ↗ | beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD | 0.54 | 47.0 | 4.02e-01 | 95.9% | 59.5% |
| 3611339 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.53 | 29.0 | 3.45e-01 | 76.9% | 75.3% |
| 4951953 | 298.1.1.24 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 | 0.53 | 35.0 | 3.04e-01 | 73.6% | 41.5% |
| 4944430 | 244.3.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU | 0.53 | 34.0 | 4.03e-01 | 71.1% | 100.0% |
| 5070420 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.51 | 43.0 | 4.10e-01 | 89.3% | 100.0% |
| 3851509 | 5.1.4.12 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema | 0.51 | 42.0 | 2.88e-01 | 91.7% | 92.4% |
| 3283334 | 298.1.1.24 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 | 0.51 | 33.0 | 2.96e-01 | 72.7% | 44.7% |
| 4002646 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.50 | 36.0 | 2.89e-01 | 75.2% | 62.7% |
| 5018105 | 298.1.1.24 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 | 0.50 | 36.0 | 3.28e-01 | 74.4% | 78.2% |