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NC_042116.1__YP_009623739.1__FDJ41_gp129__00129

Bact-Vir

NC_042116.1__YP_009623739.1__FDJ41_gp129__00129

Identity

Accession:
NC_042116 ↗
Kingdom:
phage

Quality

67.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Eneladusvirus› Yersinia_phage_fHe-Yen9-04

TaxID: 2052742

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-158
PDB
Domain cluster: rep: MN497415.1__QGH73801.1__X__00010__D3-143
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3oyyA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 31.0 4.29e-01 91.3% 100.0%
1x6oA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 32.0 4.16e-01 91.3% 94.9%
2mp1A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 27.0 3.66e-01 70.7% 89.6%
5i47B03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.51 26.0 3.10e-01 90.0% 72.6%
3u4zA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 32.0 3.73e-01 90.7% 87.2%
3fssA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 29.0 3.65e-01 95.3% 98.8%
4joiC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 32.0 3.52e-01 92.0% 79.7%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3258875 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 24.0 2.40e-01 89.3% 38.0%
3347210 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 32.0 3.82e-01 93.3% 97.7%
5010618 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 24.0 3.42e-01 98.0% 100.0%
5012252 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.50 27.0 3.09e-01 88.0% 69.1%
D2 high residues 166-257
PDB
Domain cluster: rep: SR-VP_0-2_scaffold_141_6534022_prodigal-single.1__X__X__00102__D151-226_283-313
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2do3A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.76 41.0 5.49e-01 73.9% 98.0%
2e70A00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.72 42.0 4.77e-01 77.2% 76.1%
2jngA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.71 47.0 5.13e-01 80.4% 80.5%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.71 38.0 4.92e-01 73.9% 92.3%
2ckkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 40.0 5.11e-01 71.7% 100.0%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 43.0 4.81e-01 80.4% 82.2%
1khcA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 44.0 5.09e-01 77.2% 93.8%
4b9wA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 40.0 4.96e-01 73.9% 98.2%
4fw1A02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.67 37.0 4.62e-01 72.8% 92.6%
1x6gA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 45.0 4.83e-01 76.1% 80.2%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 40.0 5.03e-01 72.8% 100.0%
5ygbA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 43.0 4.66e-01 79.3% 80.0%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 41.0 4.45e-01 73.9% 77.2%
4fssB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 41.0 4.97e-01 72.8% 100.0%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 44.0 4.94e-01 78.3% 93.1%
3gg8C03 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.62 34.0 3.40e-01 78.3% 51.5%
1txqA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.62 45.0 5.02e-01 76.1% 100.0%
6vlfA03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 38.0 4.78e-01 70.7% 100.0%
5ycqA00 2.30.30.390 Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain 0.62 49.0 5.31e-01 85.9% 100.0%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 39.0 4.74e-01 71.7% 100.0%
2e5kA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 41.0 4.93e-01 72.8% 100.0%
2eczA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 39.0 4.45e-01 71.7% 85.7%
2diqA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 43.0 4.25e-01 87.0% 68.0%
1x6bA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 39.0 4.60e-01 72.8% 93.8%
2v1qA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 39.0 4.74e-01 71.7% 100.0%
7oc3A01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 43.0 4.31e-01 78.3% 72.8%
2daqA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 47.0 4.45e-01 82.6% 87.3%
4b6mB00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.60 45.0 4.85e-01 78.3% 96.2%
2kxcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 39.0 4.53e-01 71.7% 92.5%
1n27A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 45.0 4.46e-01 81.5% 91.7%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 38.0 4.35e-01 75.0% 89.7%
7u32F02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.58 33.0 4.15e-01 72.8% 100.0%
1ug1A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 42.0 4.20e-01 75.0% 76.1%
1k1zA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 40.0 4.40e-01 72.8% 87.2%
3pvlA05 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 39.0 4.29e-01 75.0% 85.5%
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 47.0 4.51e-01 90.2% 96.3%
4ac9C04 2.40.10.190 Mainly Beta › Beta Barrel › Thrombin, subunit H › translation elongation factor selb, chain A, domain 4 0.57 35.0 3.72e-01 78.3% 70.0%
1h3zA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 49.0 4.63e-01 94.6% 98.1%
5f3yA05 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 39.0 4.31e-01 73.9% 87.0%
1sjiA03 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.56 31.0 2.83e-01 98.9% 37.9%
1zunB02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.55 36.0 3.72e-01 78.3% 68.9%
3e1yE01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.53 35.0 3.62e-01 77.2% 72.1%
2yweA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.52 37.0 3.64e-01 79.3% 68.0%
1wb1A02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.51 35.0 3.55e-01 77.2% 69.6%
4iupB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 32.0 3.74e-01 75.0% 93.5%
2bm0A02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.51 35.0 3.37e-01 77.2% 62.1%
3rleA01 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.50 38.0 3.65e-01 79.3% 88.5%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3671986 4.1.1.238 ↗ beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5 0.76 45.0 5.15e-01 79.3% 78.6%
3721794 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 41.0 5.01e-01 75.0% 86.7%
3620094 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 41.0 5.12e-01 76.1% 94.5%
4033907 4.1.1.280 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4176 0.71 50.0 4.98e-01 81.5% 70.5%
3612090 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 44.0 5.43e-01 79.3% 100.0%
3523802 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 43.0 5.16e-01 76.1% 96.7%
4524466 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.68 42.0 4.79e-01 78.3% 82.9%
4420173 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.66 42.0 4.62e-01 79.3% 78.7%
3940730 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 45.0 4.54e-01 79.3% 68.4%
3795223 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 39.0 4.09e-01 77.2% 63.5%
158939 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.66 45.0 4.83e-01 76.1% 80.2%
3405627 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 44.0 4.38e-01 81.5% 67.4%
3274551 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.64 43.0 4.76e-01 80.4% 85.3%
3441143 4.1.1.94 ↗ beta barrels › SH3 › SH3 › SH3 › SAWADEE 0.63 45.0 4.40e-01 79.3% 68.0%
3652661 4.1.1.25 ↗ beta barrels › SH3 › SH3 › SH3 › PAZ 0.63 47.0 4.19e-01 78.3% 93.8%
3393358 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.63 43.0 4.31e-01 79.3% 68.4%
4031510 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 54.0 5.48e-01 97.8% 96.7%
3982999 4.1.1.60 ↗ beta barrels › SH3 › SH3 › SH3 › YccV-like 0.62 50.0 4.90e-01 85.9% 93.0%
3842441 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.62 40.0 4.85e-01 72.8% 100.0%
3404158 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.62 48.0 4.42e-01 81.5% 86.1%
3360171 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.62 47.0 4.05e-01 79.3% 57.2%
3281618 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.61 54.0 5.30e-01 97.8% 99.0%
3470175 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.61 46.0 4.87e-01 78.3% 95.0%
3518287 4.1.1.347 ↗ beta barrels › SH3 › SH3 › SH3 › KOW7_SPT5, KOW6_SPT5 0.61 47.0 4.37e-01 81.5% 100.0%
3570230 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.61 44.0 4.53e-01 79.3% 77.8%
3280641 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.61 53.0 5.15e-01 100.0% 88.0%
3636251 4.1.1.60 ↗ beta barrels › SH3 › SH3 › SH3 › YccV-like 0.61 51.0 4.62e-01 89.1% 88.3%
3695780 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.60 41.0 4.38e-01 78.3% 80.0%
4025294 4.1.1.60 ↗ beta barrels › SH3 › SH3 › SH3 › YccV-like 0.60 50.0 5.10e-01 89.1% 100.0%
3743525 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.60 47.0 4.54e-01 83.7% 98.1%
3609256 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 45.0 4.70e-01 81.5% 84.7%
3656401 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 44.0 4.89e-01 79.3% 96.0%
3641051 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 47.0 4.67e-01 83.7% 100.0%
3912956 4.1.1.56 ↗ beta barrels › SH3 › SH3 › SH3 › RBB1NT 0.59 48.0 4.36e-01 85.9% 95.0%
4405852 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 44.0 4.64e-01 78.3% 94.1%
3390533 4.8.1.19 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › WAC_Acf1_DNA_bd 0.59 44.0 3.64e-01 78.3% 45.6%
3914462 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.59 42.0 4.32e-01 77.2% 76.7%
3787905 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.58 38.0 4.36e-01 70.7% 88.6%
3575485 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 44.0 4.14e-01 79.3% 70.9%
3766868 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.58 42.0 4.25e-01 81.5% 76.7%
3929372 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.57 39.0 4.29e-01 71.7% 85.3%
3252725 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.57 43.0 4.13e-01 79.3% 90.5%
3451173 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 43.0 4.35e-01 80.4% 81.1%
5059830 4.7.1.0 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.56 44.0 4.47e-01 82.6% 88.9%
1824182 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.56 39.0 4.31e-01 73.9% 87.0%
3334867 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.56 41.0 4.14e-01 75.0% 95.6%
3784968 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.56 41.0 4.40e-01 76.1% 90.0%
3396951 4.1.1.330 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O, SH3-C_UBE2O 0.56 47.0 3.05e-01 90.2% 78.0%
3658974 5.1.3.117 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 0.55 45.0 3.13e-01 89.1% 94.7%
3221547 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 40.0 4.34e-01 77.2% 87.5%
3707929 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 39.0 3.21e-01 72.8% 47.5%
3925803 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.55 48.0 4.50e-01 94.6% 90.9%
3394333 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 38.0 3.40e-01 75.0% 95.4%
4381865 1.1.7.19 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 0.52 37.0 3.53e-01 79.3% 61.8%
3939132 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.52 43.0 4.18e-01 87.0% 100.0%
3759604 7.1.1.4 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › GRASP55_65 0.50 37.0 3.28e-01 78.3% 68.9%
D3 high residues 260-374
PDB