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NC_042116.1__YP_009623785.1__FDJ41_gp175__00175
Bact-VirNC_042116.1__YP_009623785.1__FDJ41_gp175__00175
Identity
- Accession:
- NC_042116 ↗
- Kingdom:
- phage
Quality
75.9
mean pLDDT
Taxonomy
TaxID: 2052742
Cluster
View cluster (2 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-70
Domain cluster:
rep: LC768484.1__BEH88001.1__X__00039__D2-67
CATH (34)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1f9cA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.67 | 52.0 | 4.29e-01 | 83.8% | 99.2% |
| 2qdeA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.66 | 54.0 | 4.39e-01 | 92.6% | 99.3% |
| 4e4fA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.65 | 49.0 | 3.88e-01 | 80.9% | 82.3% |
| 3gd6A01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.65 | 49.0 | 3.93e-01 | 83.8% | 99.3% |
| 4a4kA02 | 2.30.30.1160 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 51.0 | 4.14e-01 | 94.1% | 85.0% |
| 3p8bB02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 45.0 | 4.70e-01 | 86.8% | 88.7% |
| 2kigA00 | 2.30.29.110 | Mainly Beta › Roll › PH-domain like › | 0.61 | 49.0 | 3.82e-01 | 92.6% | 73.9% |
| 4mi7A00 | 3.90.70.170 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.60 | 49.0 | 4.10e-01 | 91.2% | 57.3% |
| 1ib8A02 | 2.30.30.180 | Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain | 0.60 | 46.0 | 4.62e-01 | 89.7% | 85.1% |
| 2napA01 | 2.20.25.90 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ADC-like domains | 0.60 | 41.0 | 4.41e-01 | 72.1% | 91.4% |
| 5zr6A02 | 2.30.30.90 | Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) | 0.60 | 44.0 | 4.28e-01 | 79.4% | 90.8% |
| 1io1A03 | 2.30.220.10 | Mainly Beta › Roll › f41 fragment of flagellin, C-terminal domain › f41 fragment of flagellin, C-terminal domain | 0.58 | 46.0 | 4.27e-01 | 92.6% | 85.3% |
| 1iwmA00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.58 | 45.0 | 3.49e-01 | 89.7% | 85.3% |
| 2eqjA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 41.0 | 4.16e-01 | 83.8% | 77.3% |
| 4g54A01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.57 | 49.0 | 4.10e-01 | 100.0% | 81.6% |
| 3rlfF03 | 2.40.430.10 | Mainly Beta › Beta Barrel › Periplasmic binding protein-like II › D-maltodextrin-binding protein, MBP | 0.57 | 47.0 | 4.42e-01 | 97.1% | 78.4% |
| 1m1gB03 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 39.0 | 4.06e-01 | 83.8% | 82.5% |
| 4ii1A02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 38.0 | 4.00e-01 | 83.8% | 87.5% |
| 3lhnA00 | 2.40.128.640 | Mainly Beta › Beta Barrel › Lipocalin › | 0.55 | 43.0 | 3.80e-01 | 88.2% | 88.8% |
| 1i7dA03 | 2.70.20.10 | Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 | 0.55 | 46.0 | 3.66e-01 | 94.1% | 92.9% |
| 1y96D00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 40.0 | 3.90e-01 | 85.3% | 69.9% |
| 6j5cA02 | 3.30.67.10 | Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 | 0.54 | 44.0 | 4.17e-01 | 92.6% | 77.1% |
| 3pieC09 | 2.30.30.750 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 42.0 | 3.74e-01 | 86.8% | 85.9% |
| 1zq1A01 | 2.30.30.520 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 42.0 | 4.07e-01 | 89.7% | 80.5% |
| 1yy3A02 | 2.40.10.240 | Mainly Beta › Beta Barrel › Thrombin, subunit H › QueA-like | 0.53 | 42.0 | 3.80e-01 | 89.7% | 84.8% |
| 2qi2A01 | 2.30.30.870 | Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A | 0.52 | 40.0 | 3.58e-01 | 88.2% | 56.7% |
| 1zo0A00 | 3.40.630.60 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › | 0.52 | 36.0 | 3.00e-01 | 79.4% | 39.7% |
| 1wr2A01 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.52 | 42.0 | 3.31e-01 | 94.1% | 65.6% |
| 2h7aA01 | 3.10.510.20 | Alpha Beta › Roll › NE1680-like fold › YcgL domain | 0.51 | 41.0 | 4.01e-01 | 98.5% | 80.3% |
| 6my0A02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 38.0 | 3.89e-01 | 88.2% | 86.2% |
| 2dd7A00 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.51 | 40.0 | 2.88e-01 | 88.2% | 48.1% |
| 1gutA00 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.50 | 37.0 | 3.74e-01 | 100.0% | 82.1% |
| 3q5zA02 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.50 | 37.0 | 3.20e-01 | 82.4% | 67.8% |
| 8p2aA01 | 3.90.1010.20 | Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › | 0.50 | 38.0 | 3.61e-01 | 86.8% | 98.9% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3216019 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 46.0 | 4.74e-01 | 82.4% | 100.0% |
| 3741020 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.60 | 47.0 | 4.71e-01 | 91.2% | 84.3% |
| 3824346 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.60 | 44.0 | 4.22e-01 | 85.3% | 67.5% |
| 3697694 | 4.1.1.288 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF6540 | 0.60 | 50.0 | 4.24e-01 | 95.6% | 64.4% |
| 3578208 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 41.0 | 4.44e-01 | 79.4% | 90.9% |
| 3766659 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.58 | 43.0 | 4.49e-01 | 83.8% | 90.0% |
| 4466506 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 46.0 | 4.50e-01 | 88.2% | 84.0% |
| 3410798 | 6.1.1.1 ↗ | beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › FGF | 0.58 | 45.0 | 3.60e-01 | 85.3% | 94.5% |
| 3926118 | 4.1.1.223 ↗ | beta barrels › SH3 › SH3 › SH3 › KIF2A-like_1st | 0.58 | 43.0 | 4.53e-01 | 82.4% | 91.7% |
| 4932473 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.57 | 47.0 | 3.27e-01 | 91.2% | 45.5% |
| 5015352 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.57 | 42.0 | 4.01e-01 | 89.7% | 66.3% |
| 3924377 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 39.0 | 4.22e-01 | 83.8% | 94.5% |
| 4105193 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.56 | 38.0 | 3.46e-01 | 72.1% | 82.1% |
| 4537528 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 42.0 | 4.24e-01 | 83.8% | 94.3% |
| 3942573 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.55 | 42.0 | 4.46e-01 | 88.2% | 100.0% |
| 3933047 | 4.1.1.187 ↗ | beta barrels › SH3 › SH3 › SH3 › DIRP | 0.55 | 40.0 | 3.10e-01 | 83.8% | 33.1% |
| 4293453 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.55 | 45.0 | 4.35e-01 | 95.6% | 86.3% |
| 3737837 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.55 | 41.0 | 4.25e-01 | 83.8% | 96.9% |
| 4940673 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.54 | 38.0 | 4.01e-01 | 83.8% | 86.7% |
| 5080336 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.54 | 39.0 | 3.99e-01 | 88.2% | 82.8% |
| 3166879 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.54 | 41.0 | 4.17e-01 | 83.8% | 93.8% |
| 3636503 | 4.1.1.33 ↗ | beta barrels › SH3 › SH3 › SH3 › Myosin_N | 0.53 | 40.0 | 4.04e-01 | 85.3% | 91.4% |
| 4966163 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.53 | 39.0 | 3.80e-01 | 82.4% | 72.0% |
| 4505316 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.52 | 38.0 | 3.92e-01 | 89.7% | 90.0% |
| 4583636 | 6129.1.1.1 ↗ | beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD | 0.52 | 42.0 | 3.17e-01 | 91.2% | 81.6% |
| 4302391 | 4.1.1.398 ↗ | beta barrels › SH3 › SH3 › SH3 › YolD | 0.52 | 36.0 | 3.72e-01 | 82.4% | 78.5% |
| 3244497 | 4.1.1.187 ↗ | beta barrels › SH3 › SH3 › SH3 › DIRP | 0.52 | 37.0 | 3.00e-01 | 86.8% | 35.3% |
| 5043132 | 4.15.1.2 ↗ | beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 | 0.52 | 42.0 | 3.93e-01 | 92.6% | 72.9% |
| 4041376 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.52 | 40.0 | 3.87e-01 | 88.2% | 75.0% |
| 5043037 | 5090.1.1.0 ↗ | beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains | 0.52 | 37.0 | 3.44e-01 | 80.9% | 90.0% |
| 5064370 | 3518.1.1.1 ↗ | a+b two layers › putative RnfG subunit of electron transport complex › putative RnfG subunit of electron transport complex › putative RnfG subunit of electron transport complex › FMN_bind | 0.52 | 38.0 | 3.37e-01 | 82.4% | 90.7% |
| 4667155 | 4252.1.1.0 ↗ | beta barrels › AttH-like › AttH-like › AttH-like | 0.51 | 41.0 | 3.35e-01 | 91.2% | 88.4% |
| 3947700 | 4.8.1.25 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DSRB | 0.51 | 38.0 | 3.96e-01 | 86.8% | 96.8% |
| 4963369 | 71.1.1.0 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB | 0.50 | 39.0 | 3.01e-01 | 86.8% | 97.6% |
| 4979281 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.50 | 40.0 | 2.89e-01 | 94.1% | 42.1% |
| 3520654 | 4.1.1.187 ↗ | beta barrels › SH3 › SH3 › SH3 › DIRP | 0.50 | 36.0 | 2.91e-01 | 86.8% | 36.0% |