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NC_042116.1__YP_009623993.1__FDJ41_gp520__00383

Bact-Vir

NC_042116.1__YP_009623993.1__FDJ41_gp520__00383

Identity

Accession:
NC_042116 ↗
Kingdom:
phage

Quality

63.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Eneladusvirus› Yersinia_phage_fHe-Yen9-04

TaxID: 2052742

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 19-82
PDB
Domain cluster: representative
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6o5cA02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.70 62.0 5.87e-01 100.0% 92.1%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 54.0 5.32e-01 90.6% 80.9%
6uzjA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 57.0 5.76e-01 100.0% 95.2%
3pe0A03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 55.0 5.52e-01 100.0% 90.6%
1gcqB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 52.0 5.45e-01 89.1% 94.7%
3e19B01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.66 53.0 5.37e-01 90.6% 98.4%
2ckkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 50.0 5.35e-01 92.2% 98.1%
5yprA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 57.0 5.22e-01 95.3% 83.1%
2k5iA01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.66 56.0 5.20e-01 98.4% 82.1%
2epdA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 52.0 4.93e-01 90.6% 72.4%
1ov3A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 51.0 5.36e-01 89.1% 98.2%
2ekhA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 51.0 4.79e-01 90.6% 68.8%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 55.0 5.50e-01 96.9% 97.0%
2pqhB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 49.0 4.92e-01 90.6% 84.6%
1s1nA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 50.0 5.11e-01 90.6% 93.3%
5o99A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 49.0 5.05e-01 92.2% 93.3%
3mp6A05 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 46.0 4.70e-01 100.0% 82.5%
1ylnA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 49.0 4.06e-01 93.8% 87.7%
3oymA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 46.0 4.53e-01 100.0% 82.9%
5yrzB00 3.30.920.30 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. 0.56 33.0 3.44e-01 78.1% 63.8%
3fjyA02 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.53 37.0 2.89e-01 78.1% 39.5%
1bebA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 45.0 3.49e-01 100.0% 73.1%
2xfmA00 2.170.260.10 Mainly Beta › Beta Complex › paz domain › paz domain 0.52 45.0 3.72e-01 100.0% 92.5%
2ox7A02 2.30.30.290 Mainly Beta › Roll › SH3 type barrels. › YopX-like domains 0.52 45.0 4.39e-01 100.0% 89.9%
2xstA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 42.0 3.37e-01 100.0% 73.2%
3d2mA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.50 39.0 3.12e-01 90.6% 50.0%
4nogA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.50 40.0 3.05e-01 92.2% 67.3%
ECOD (44)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3770802 4.1.1.248 ↗ beta barrels › SH3 › SH3 › SH3 › CABIT 0.70 61.0 5.31e-01 100.0% 86.1%
4610859 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.70 58.0 5.79e-01 96.9% 89.2%
3267416 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.70 59.0 5.46e-01 96.9% 73.8%
5042313 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.68 59.0 5.63e-01 98.4% 89.3%
4951199 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.68 58.0 5.61e-01 100.0% 90.7%
4939495 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.68 58.0 5.64e-01 98.4% 94.5%
3216017 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 56.0 5.03e-01 92.2% 72.2%
4133335 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.67 52.0 5.38e-01 90.6% 90.0%
5063688 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.67 58.0 5.25e-01 98.4% 76.4%
4963580 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.67 57.0 5.36e-01 100.0% 88.7%
3765007 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.67 53.0 5.14e-01 90.6% 78.6%
3842062 4.1.1.91 ↗ beta barrels › SH3 › SH3 › SH3 › hSH3 0.66 55.0 4.71e-01 90.6% 58.0%
5016488 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 52.0 5.33e-01 85.9% 100.0%
4473115 4.1.1.5 ↗ beta barrels › SH3 › SH3 › SH3 › KOW,Ribosomal_L14e 0.66 49.0 4.26e-01 100.0% 51.0%
3507003 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 57.0 5.48e-01 100.0% 94.7%
3270547 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.66 52.0 5.21e-01 90.6% 84.6%
5048137 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.66 57.0 5.47e-01 100.0% 93.2%
3910605 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.65 54.0 5.03e-01 90.6% 76.2%
162441 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.65 51.0 4.98e-01 90.6% 77.5%
165657 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.65 51.0 5.10e-01 90.6% 82.1%
3234274 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.65 56.0 5.50e-01 100.0% 90.0%
3924337 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 53.0 5.51e-01 95.3% 96.7%
3348456 4.1.1.322 ↗ beta barrels › SH3 › SH3 › SH3 › GPKOW_C 0.65 53.0 5.41e-01 100.0% 96.7%
3269589 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.65 51.0 4.97e-01 90.6% 78.6%
3999508 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 56.0 5.51e-01 98.4% 91.4%
3326132 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 47.0 4.70e-01 100.0% 76.9%
3924149 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 45.0 4.88e-01 95.3% 96.0%
3554994 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.63 55.0 4.99e-01 100.0% 74.2%
3222195 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.63 53.0 5.31e-01 95.3% 93.8%
3589730 4.1.1.252 ↗ beta barrels › SH3 › SH3 › SH3 › MdcG_N 0.62 52.0 4.95e-01 98.4% 88.7%
3925408 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 44.0 4.87e-01 95.3% 98.0%
3504834 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 48.0 5.05e-01 100.0% 96.6%
3830656 4.1.1.158 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3444 0.61 54.0 4.36e-01 98.4% 70.0%
3236689 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 46.0 4.86e-01 100.0% 96.4%
3510676 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 47.0 4.14e-01 100.0% 57.9%
3935130 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 44.0 4.66e-01 95.3% 92.7%
3228853 2.1.1.41 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RMI1_N_C 0.59 43.0 3.47e-01 78.1% 80.0%
3926017 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 45.0 4.74e-01 95.3% 96.4%
3738762 4030.1.1.0 ↗ alpha bundles › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz 0.59 51.0 4.29e-01 100.0% 58.3%
3636896 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 51.0 4.88e-01 100.0% 84.0%
3427965 4.1.1.232 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Tf2-1 0.58 50.0 4.81e-01 100.0% 93.3%
3737897 4.1.1.232 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Tf2-1 0.58 51.0 4.98e-01 100.0% 95.7%
3928292 2.1.1.37 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_NTP_bind 0.54 38.0 3.42e-01 73.4% 95.6%
3631186 4.1.1.303 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.54 45.0 4.46e-01 100.0% 88.6%