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NC_042116.1__YP_009624020.1__FDJ41_gp493__00410
Bact-VirNC_042116.1__YP_009624020.1__FDJ41_gp493__00410
Identity
- Accession:
- NC_042116 ↗
- Kingdom:
- phage
Quality
79.0
mean pLDDT
Taxonomy
TaxID: 2052742
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-134
Domain cluster:
representative
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3pv7A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.68 | 38.0 | 4.36e-01 | 80.9% | 74.5% |
| 1es0A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.67 | 34.0 | 3.87e-01 | 80.9% | 63.6% |
| 2bc4A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.67 | 36.0 | 3.94e-01 | 86.3% | 62.4% |
| 2n59A00 | 2.60.40.2420 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.65 | 37.0 | 4.16e-01 | 87.8% | 71.3% |
| 2w59A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.65 | 34.0 | 3.83e-01 | 80.9% | 65.0% |
| 2mklC00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.64 | 34.0 | 3.76e-01 | 81.7% | 62.9% |
| 2covG00 | 2.60.40.2450 | Mainly Beta › Sandwich › Immunoglobulin-like › Beta-1,3-xylanase, CBM31 domain | 0.64 | 31.0 | 3.74e-01 | 88.5% | 68.2% |
| 4i0kA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.63 | 33.0 | 3.82e-01 | 83.2% | 68.4% |
| 1o0vA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.63 | 35.0 | 3.80e-01 | 81.7% | 64.5% |
| 2pn5A03 | 2.60.40.1940 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.63 | 34.0 | 3.80e-01 | 85.5% | 65.7% |
| 6gp1A00 | 3.30.1300.40 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › | 0.61 | 20.0 | 2.88e-01 | 80.9% | 60.0% |
| 2wllA02 | 2.60.40.1400 | Mainly Beta › Sandwich › Immunoglobulin-like › G protein-activated inward rectifier potassium channel 1 | 0.60 | 47.0 | 4.54e-01 | 97.7% | 73.1% |
| 5jtwA03 | 2.60.40.1940 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.60 | 38.0 | 3.93e-01 | 84.0% | 66.1% |
| 1k8iB02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 32.0 | 3.60e-01 | 80.9% | 65.7% |
| 6m9yA00 | 3.30.1300.40 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › | 0.58 | 20.0 | 3.02e-01 | 81.7% | 70.2% |
| 3kxtA00 | 2.30.30.610 | Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 | 0.58 | 20.0 | 2.86e-01 | 82.4% | 64.3% |
| 1iz6A01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 21.0 | 2.83e-01 | 95.4% | 60.9% |
| 8evkA01 | 3.30.1130.10 | Alpha Beta › 2-Layer Sandwich › GTP Cyclohydrolase I, domain 2 › GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain | 0.56 | 35.0 | 3.88e-01 | 80.9% | 75.9% |
| 2zplB00 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.55 | 30.0 | 3.38e-01 | 98.5% | 69.1% |
| 4mbrA02 | 2.60.40.1290 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 34.0 | 3.13e-01 | 100.0% | 48.2% |
| 4pofA03 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.55 | 23.0 | 3.40e-01 | 70.2% | 98.0% |
| 3ecrB03 | 3.30.160.40 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain | 0.54 | 29.0 | 3.19e-01 | 80.9% | 63.7% |
| 4makB00 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 31.0 | 3.95e-01 | 80.9% | 97.4% |
| 2zuoA08 | 2.30.30.620 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 23.0 | 3.22e-01 | 76.3% | 86.2% |
| 3nwnA00 | 3.40.850.10 | Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain | 0.52 | 39.0 | 2.96e-01 | 80.2% | 33.4% |
| 1ltlA03 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.52 | 22.0 | 3.19e-01 | 70.2% | 98.0% |
| 7skhB01 | 2.60.40.60 | Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins | 0.52 | 28.0 | 3.14e-01 | 84.0% | 67.0% |
| 2nlkA02 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.51 | 39.0 | 3.13e-01 | 80.9% | 100.0% |
| 1pvgA01 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.51 | 40.0 | 3.26e-01 | 84.0% | 87.7% |
| 1ryp200 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.50 | 41.0 | 3.38e-01 | 87.0% | 87.1% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4934274 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.60 | 32.0 | 3.79e-01 | 97.7% | 75.3% |
| 3864149 | 11.1.1.805 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_PDGFR_d4 | 0.60 | 38.0 | 3.71e-01 | 84.0% | 58.6% |
| 3388200 | 230.1.1.4 ↗ | a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › FolB | 0.56 | 34.0 | 3.77e-01 | 83.2% | 75.2% |
| 3581414 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 26.0 | 3.65e-01 | 81.7% | 100.0% |
| 3175336 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.52 | 28.0 | 3.52e-01 | 92.4% | 89.3% |