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NC_042116.1__YP_009624025.1__FDJ41_gp488__00415

Bact-Vir

NC_042116.1__YP_009624025.1__FDJ41_gp488__00415

Identity

Accession:
NC_042116 ↗
Kingdom:
phage

Quality

87.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Eneladusvirus› Yersinia_phage_fHe-Yen9-04

TaxID: 2052742

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-63
PDB
Domain cluster: rep: IMGVR_UViG_3300021492_000027-3300021492-Ga0190336_100000264__D5-73
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ic1D00 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.75 54.0 3.65e-01 77.2% 26.2%
2plqA00 3.60.110.10 Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase 0.70 62.0 3.79e-01 100.0% 27.6%
1b63A01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.69 50.0 3.44e-01 78.9% 81.9%
3n05A01 3.60.110.10 Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase 0.69 59.0 3.71e-01 96.5% 39.3%
1uwvA03 2.40.50.1070 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.66 46.0 3.53e-01 73.7% 31.4%
2hqyA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.66 47.0 3.68e-01 77.2% 53.8%
3ieyA02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.66 47.0 4.01e-01 78.9% 49.0%
3zigA00 3.30.110.150 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › SepF-like protein 0.65 45.0 4.09e-01 75.4% 89.0%
3ctoD00 3.40.1620.10 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › YefM-like domain 0.64 43.0 4.14e-01 71.9% 61.5%
3ieyB00 3.40.1350.150 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.63 46.0 3.43e-01 78.9% 32.9%
1ir6A02 3.10.310.30 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.63 55.0 4.28e-01 100.0% 55.8%
2znrA00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.63 51.0 3.67e-01 93.0% 84.8%
1a79A01 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.62 45.0 3.87e-01 80.7% 51.0%
3ajvC02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.62 47.0 4.12e-01 84.2% 58.2%
2zyzC00 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.62 45.0 3.85e-01 78.9% 52.1%
3vpbA01 3.40.50.20 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.62 44.0 3.71e-01 96.5% 42.6%
2cxiA02 3.50.40.10 Alpha Beta › 3-Layer(bba) Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 3 › Phenylalanyl-trna Synthetase, Chain B, domain 3 0.62 45.0 3.10e-01 77.2% 86.4%
2f02B00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.62 52.0 3.32e-01 100.0% 20.1%
4z9eA00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.61 46.0 4.07e-01 82.5% 61.2%
2r47A01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.61 48.0 3.72e-01 91.2% 38.4%
4xfjB01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.61 45.0 3.28e-01 82.5% 95.4%
5g5tA02 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.60 49.0 3.48e-01 98.2% 43.6%
5dynA01 3.40.50.11970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.59 49.0 4.17e-01 100.0% 65.1%
2carB00 3.90.950.10 Alpha Beta › Alpha-Beta Complex › Maf protein › 0.59 50.0 3.51e-01 98.2% 90.2%
2odkA00 3.40.1620.10 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › YefM-like domain 0.59 40.0 4.21e-01 73.7% 82.0%
1s14B00 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.58 48.0 3.55e-01 100.0% 38.2%
3p24A01 2.40.128.470 Mainly Beta › Beta Barrel › Lipocalin › 0.58 46.0 3.57e-01 98.2% 54.9%
5ceeA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.58 46.0 3.08e-01 91.2% 22.0%
2wvlB00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.57 40.0 2.51e-01 77.2% 13.9%
4be9B00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.57 46.0 2.74e-01 94.7% 52.3%
7lgjA01 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.57 42.0 2.89e-01 94.7% 20.3%
3ilvA01 3.60.110.10 Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase 0.56 48.0 3.18e-01 100.0% 47.8%
2eo0B00 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.56 46.0 3.72e-01 98.2% 54.8%
4wd3A01 3.40.50.20 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 46.0 3.78e-01 100.0% 87.5%
1wu7A03 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.55 46.0 3.96e-01 98.2% 81.4%
1aj6A00 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.55 44.0 3.25e-01 100.0% 40.2%
1q1gA00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.55 46.0 3.11e-01 100.0% 67.1%
5f2hA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.55 47.0 3.39e-01 100.0% 79.4%
2gmqA00 2.40.450.10 Mainly Beta › Beta Barrel › PUA domain-like fold › PUA domain-like domain 0.55 45.0 3.93e-01 100.0% 98.0%
4wesB02 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.55 47.0 3.88e-01 98.2% 53.8%
3eeqA01 3.40.50.11220 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 45.0 3.56e-01 96.5% 57.5%
1eupA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.52 41.0 2.55e-01 94.7% 76.9%
3ll9B00 3.40.1160.10 Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like 0.52 43.0 2.92e-01 100.0% 45.4%
2ph7A02 3.40.50.10670 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › af2093 domain 0.52 41.0 3.57e-01 93.0% 77.1%
1hkvA01 2.40.37.10 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 0.51 38.0 2.79e-01 86.0% 69.2%
3cebA02 3.20.10.10 Alpha Beta › Alpha-Beta Barrel › D-amino Acid Aminotransferase; Chain A, domain 2 › D-amino Acid Aminotransferase, subunit A, domain 2 0.51 41.0 3.51e-01 98.2% 77.1%
2ehbD00 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.51 42.0 3.28e-01 91.2% 42.9%
7bovA01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.51 40.0 2.97e-01 98.2% 72.2%
3uk7A01 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.51 41.0 2.92e-01 93.0% 34.7%
6tgvA01 3.40.50.1950 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavin prenyltransferase-like 0.51 43.0 3.10e-01 98.2% 32.4%
ECOD (90)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5036485 3688.1.1.0 ↗ a+b two layers › N-terminal subdomain in UbiD middle domain › N-terminal subdomain in UbiD middle domain › N-terminal subdomain in UbiD middle domain 0.78 54.0 4.89e-01 75.4% 54.7%
None — 0.77 53.0 3.19e-01 71.9% 11.5%
4520708 2003.1.5.53 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › tRNA_U5-meth_tr 0.76 51.0 3.12e-01 71.9% 11.4%
4462824 2003.1.5.174 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › tRNA_U5-meth_tr, Methyltransf_15 0.75 51.0 3.07e-01 71.9% 11.1%
None — 0.73 49.0 2.97e-01 71.9% 11.1%
3646564 109.4.1.1267 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif 0.73 51.0 2.94e-01 75.4% 7.8%
3348902 109.4.1.1291 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, E_motif 0.72 52.0 2.98e-01 77.2% 7.7%
3826564 109.4.1.1285 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, Eplus_motif, E_motif 0.72 53.0 2.98e-01 84.2% 6.4%
3366458 109.4.1.3005 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_3, DYW_deaminase 0.72 51.0 3.05e-01 77.2% 10.4%
3302114 109.4.1.619 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DYW_deaminase 0.71 57.0 4.33e-01 93.0% 37.0%
3643646 109.4.1.2680 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, DYW_deaminase, TPR_24 0.71 55.0 3.28e-01 87.7% 11.9%
3651007 109.4.1.1285 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, Eplus_motif, E_motif 0.71 57.0 3.21e-01 93.0% 7.6%
3677917 109.3.1.320 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › DYW_deaminase 0.71 56.0 4.28e-01 87.7% 37.0%
3321758 109.4.1.1285 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, Eplus_motif, E_motif 0.71 52.0 2.95e-01 86.0% 7.6%
3440323 109.4.1.1285 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, Eplus_motif, E_motif 0.71 57.0 3.22e-01 93.0% 7.7%
3832641 109.4.1.1267 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif 0.71 56.0 3.12e-01 87.7% 6.8%
3816405 109.4.1.1383 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, Eplus_motif, E_motif 0.71 57.0 3.23e-01 93.0% 8.4%
3351960 109.4.1.2979 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_3, DYW_deaminase, Eplus_motif, E_motif 0.71 54.0 3.09e-01 89.5% 7.8%
3453417 2492.1.1.39 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › DYW_deaminase 0.71 56.0 4.27e-01 87.7% 37.0%
4990342 3688.1.1.1 ↗ a+b two layers › N-terminal subdomain in UbiD middle domain › N-terminal subdomain in UbiD middle domain › N-terminal subdomain in UbiD middle domain › UbiD_N 0.71 50.0 4.51e-01 75.4% 53.8%
3318145 109.4.1.1521 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, DYW_deaminase, Eplus_motif, E_motif 0.71 55.0 3.58e-01 89.5% 18.8%
3335071 109.4.1.1285 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, Eplus_motif, E_motif 0.71 56.0 3.26e-01 93.0% 9.0%
3452954 109.4.1.1285 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, Eplus_motif, E_motif 0.71 53.0 3.04e-01 86.0% 7.9%
4452789 225.1.1.7 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c_3 0.71 51.0 3.49e-01 77.2% 82.4%
3681440 109.4.1.1267 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif 0.71 55.0 3.17e-01 86.0% 9.0%
3371469 109.4.1.3022 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, Eplus_motif, E_motif, TPR_24 0.71 54.0 3.10e-01 89.5% 8.0%
3329353 3164.1.1.3 ↗ few secondary structure elements › Zinc-binding domain in Junin virus envelope glycoprotein › Zinc-binding domain in Junin virus envelope glycoprotein › Zinc-binding domain in Junin virus envelope glycoprotein › DYW_deaminase 0.70 55.0 4.23e-01 87.7% 37.0%
3651804 109.4.1.1520 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, DYW_deaminase, E_motif 0.70 55.0 3.22e-01 87.7% 9.8%
3374645 109.4.1.1291 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, E_motif 0.70 54.0 3.17e-01 86.0% 9.4%
3333064 109.4.1.1525 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, DYW_deaminase 0.70 52.0 3.09e-01 91.2% 10.6%
None — 0.70 56.0 4.26e-01 93.0% 37.0%
4947849 2008.2.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like 0.70 50.0 4.24e-01 75.4% 51.6%
3830169 109.4.1.1383 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, Eplus_motif, E_motif 0.70 56.0 3.11e-01 93.0% 6.7%
3649419 109.4.1.1525 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, DYW_deaminase 0.70 53.0 3.24e-01 87.7% 12.8%
3420651 109.4.1.1521 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, DYW_deaminase, Eplus_motif, E_motif 0.70 55.0 3.44e-01 93.0% 15.0%
3668499 109.4.1.1267 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif 0.70 54.0 3.08e-01 86.0% 8.2%
3369165 109.4.1.1525 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, DYW_deaminase 0.70 54.0 3.48e-01 87.7% 17.5%
3307527 109.4.1.619 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DYW_deaminase 0.70 55.0 4.26e-01 93.0% 37.8%
3371543 109.4.1.1599 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase 0.70 52.0 3.39e-01 87.7% 17.1%
4928422 2003.6.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.70 62.0 3.87e-01 100.0% 41.2%
3333061 109.4.1.1267 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif 0.69 53.0 3.06e-01 86.0% 8.0%
3330216 2484.1.1.189 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DYW_deaminase 0.69 55.0 4.24e-01 93.0% 38.1%
3671662 109.4.1.1267 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif 0.69 53.0 2.93e-01 89.5% 5.4%
3358618 109.4.1.2988 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DYW_deaminase, E_motif 0.69 46.0 3.31e-01 70.2% 22.9%
3829181 109.4.1.2332 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2, DYW_deaminase 0.69 55.0 3.39e-01 93.0% 14.6%
None — 0.69 48.0 2.94e-01 73.7% 11.7%
3680212 109.4.1.1525 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, DYW_deaminase 0.69 54.0 3.33e-01 93.0% 13.6%
3818971 109.4.1.1291 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, E_motif 0.68 54.0 3.08e-01 93.0% 8.2%
3683857 109.4.1.1285 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, Eplus_motif, E_motif 0.68 54.0 3.08e-01 93.0% 8.1%
4152182 2008.2.1.1 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo 0.68 49.0 4.17e-01 77.2% 51.6%
4060768 225.1.1.7 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c_3 0.68 51.0 3.53e-01 84.2% 82.4%
4936947 5104.1.1.0 ↗ a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases 0.68 57.0 4.39e-01 94.7% 52.3%
4995435 2004.1.1.97 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MobB 0.67 48.0 3.41e-01 75.4% 25.3%
3677688 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.67 56.0 4.22e-01 98.2% 68.7%
3975571 219.1.1.8 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 0.67 55.0 3.88e-01 94.7% 85.8%
4153860 5104.1.1.1 ↗ a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.66 57.0 4.50e-01 100.0% 65.6%
3676373 109.4.1.1291 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, E_motif 0.66 48.0 2.78e-01 80.7% 9.3%
5038176 2008.2.1.1 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo 0.65 47.0 4.32e-01 78.9% 57.7%
4379604 2008.2.1.1 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo 0.65 47.0 3.95e-01 78.9% 48.1%
4202301 3688.1.1.0 ↗ a+b two layers › N-terminal subdomain in UbiD middle domain › N-terminal subdomain in UbiD middle domain › N-terminal subdomain in UbiD middle domain 0.65 45.0 4.20e-01 75.4% 57.5%
4959170 5104.1.1.1 ↗ a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.65 55.0 4.47e-01 100.0% 67.8%
3743744 328.3.1.0 ↗ a+b two layers › IF3-like › Translation initiation factor IF3, C-terminal domain › Translation initiation factor IF3, C-terminal domain 0.65 46.0 3.92e-01 75.4% 90.5%
5011455 2008.2.1.1 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo 0.65 46.0 4.18e-01 77.2% 61.3%
4336912 5104.1.1.0 ↗ a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases 0.64 56.0 4.61e-01 100.0% 67.6%
5072831 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.64 37.0 3.66e-01 84.2% 49.2%
3980132 823.1.1.1 ↗ a+b two layers › Head-to-tail joining protein W, gpW › Head-to-tail joining protein W, gpW › Head-to-tail joining protein W, gpW › gpW 0.64 44.0 4.46e-01 73.7% 85.5%
4037091 5104.1.1.1 ↗ a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.64 53.0 4.34e-01 98.2% 67.8%
4948773 2008.2.1.1 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo 0.63 46.0 3.35e-01 78.9% 29.6%
7060 5104.1.1.1 ↗ a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.63 55.0 4.34e-01 100.0% 58.5%
3368873 2008.2.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like 0.63 44.0 3.55e-01 77.2% 37.6%
4932500 2008.2.1.1 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo 0.62 44.0 3.71e-01 77.2% 49.5%
1171244 2008.2.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like 0.62 45.0 3.85e-01 78.9% 52.1%
415017 4267.1.1.1 ↗ a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like › PhdYeFM_antitox 0.62 42.0 3.70e-01 73.7% 45.1%
4170201 2008.2.1.1 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo 0.62 44.0 3.84e-01 78.9% 54.7%
3277900 3105.1.1.3 ↗ a+b three layers › thylakoid acid phosphatase domain-related › thylakoid acid phosphatase domain-related › thylakoid acid phosphatase domain-related › DUF6676 0.62 52.0 4.23e-01 100.0% 49.2%
4271018 2003.1.5.53 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › tRNA_U5-meth_tr 0.62 43.0 2.68e-01 77.2% 11.8%
4932552 2008.2.1.1 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo 0.61 44.0 3.63e-01 78.9% 43.6%
5059996 2008.2.1.1 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo 0.61 43.0 3.79e-01 78.9% 54.7%
3588817 5104.1.1.1 ↗ a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.61 50.0 4.10e-01 100.0% 65.0%
5081349 2008.2.1.1 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo 0.61 44.0 3.68e-01 78.9% 47.6%
5000875 2008.2.1.1 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo 0.61 41.0 3.64e-01 71.9% 54.4%
4994452 2008.2.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like 0.60 42.0 3.73e-01 78.9% 54.7%
4953465 109.4.1.5 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1 0.60 49.0 3.52e-01 98.2% 32.3%
3598626 2008.2.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like 0.59 44.0 3.88e-01 84.2% 56.7%
3394097 7502.1.1.0 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.58 47.0 3.98e-01 93.0% 77.0%
None — 0.58 41.0 2.65e-01 77.2% 25.8%
3552280 2008.2.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like 0.58 43.0 3.51e-01 82.5% 43.5%
5008297 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.56 41.0 3.68e-01 100.0% 53.3%
4149625 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.54 43.0 3.66e-01 91.2% 77.8%
3558482 2007.1.1.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like 0.52 43.0 3.01e-01 98.2% 29.8%