Back to structures

NC_042116.1__YP_009624066.1__FDJ41_gp447__00456

Bact-Vir

NC_042116.1__YP_009624066.1__FDJ41_gp447__00456

Identity

Accession:
NC_042116 ↗
Kingdom:
phage

Quality

65.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 43-105
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3q9vA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 49.0 4.23e-01 88.9% 62.2%
7bexA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.56 37.0 2.87e-01 73.0% 27.8%
1f5qB01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.56 46.0 3.86e-01 92.1% 53.2%
2w96A02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.55 45.0 3.78e-01 93.7% 90.3%
2rh8A00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 44.0 2.88e-01 98.4% 93.9%
1mo9A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 39.0 2.75e-01 84.1% 77.5%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5000397 1.1.7.2 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Ribosomal_L3 0.60 40.0 2.42e-01 85.7% 11.6%
3827046 284.1.3.1 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › SNF5 0.56 44.0 3.90e-01 84.1% 77.8%
3782281 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.51 36.0 3.30e-01 74.6% 87.5%