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NC_042116.1__YP_009624096.1__FDJ41_gp417__00486
Bact-VirNC_042116.1__YP_009624096.1__FDJ41_gp417__00486
Identity
- Accession:
- NC_042116 ↗
- Kingdom:
- phage
Quality
87.2
mean pLDDT
Taxonomy
TaxID: 2052742
Cluster
View cluster (2 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-55
Domain cluster:
representative
D2
high
residues 64-154
Domain cluster:
representative
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2lt1A00 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.69 | 41.0 | 4.41e-01 | 76.9% | 70.7% |
| 2eyqA05 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.67 | 36.0 | 4.30e-01 | 72.5% | 79.7% |
| 1rl2A01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.65 | 33.0 | 4.05e-01 | 82.4% | 78.6% |
| 2wozA00 | 2.120.10.80 | Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller | 0.57 | 41.0 | 2.88e-01 | 74.7% | 71.0% |
| 3p9aF00 | 1.10.132.80 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › | 0.55 | 49.0 | 4.26e-01 | 95.6% | 71.6% |
| 3natA01 | 3.40.50.11250 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Protein of unknown function DUF3013 | 0.54 | 38.0 | 3.24e-01 | 73.6% | 63.9% |
| 1yw5A01 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.54 | 33.0 | 3.84e-01 | 79.1% | 88.9% |
| 2ia1A01 | 3.30.500.20 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › BH3703-like domains | 0.54 | 44.0 | 4.00e-01 | 87.9% | 68.1% |
| 6l4lA02 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.52 | 35.0 | 3.21e-01 | 70.3% | 77.2% |
| 4oxwA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.52 | 38.0 | 3.62e-01 | 75.8% | 74.5% |
| 3nhqC03 | 3.30.450.270 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain | 0.52 | 41.0 | 3.52e-01 | 83.5% | 96.5% |
| 1mwsA04 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.52 | 43.0 | 2.98e-01 | 92.3% | 52.6% |
| 1wquA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.51 | 37.0 | 3.48e-01 | 75.8% | 70.2% |
| 2gcuA01 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.51 | 37.0 | 2.87e-01 | 79.1% | 84.0% |
| 4wsfA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.50 | 39.0 | 3.71e-01 | 85.7% | 73.9% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1112010 | 4.1.1.32 ↗ | beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID | 0.69 | 41.0 | 4.41e-01 | 76.9% | 70.7% |
| 3238244 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.68 | 44.0 | 4.59e-01 | 91.2% | 70.6% |
| 3721377 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.67 | 41.0 | 3.71e-01 | 84.6% | 45.8% |
| 4129336 | 3675.1.1.0 ↗ | a+b complex topology › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain | 0.63 | 43.0 | 3.64e-01 | 70.3% | 58.7% |
| 3604410 | 2004.1.1.293 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_15 | 0.62 | 43.0 | 3.53e-01 | 85.7% | 37.2% |
| 3576373 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.59 | 42.0 | 2.80e-01 | 75.8% | 76.5% |
| 3924385 | 1.1.15.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like | 0.57 | 45.0 | 3.10e-01 | 84.6% | 93.8% |
| 4414068 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.55 | 46.0 | 3.39e-01 | 93.4% | 80.4% |
| 4028595 | 59.1.4.1 ↗ | beta complex topology › triple barrel › triple barrel › TFIID subunits TAF1-TAF7 › TAFII55_N | 0.55 | 39.0 | 3.31e-01 | 74.7% | 70.3% |
| 4975431 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.54 | 37.0 | 3.74e-01 | 70.3% | 77.8% |
| 3237884 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.54 | 39.0 | 3.10e-01 | 75.8% | 76.9% |
| 3651001 | 376.1.1.101 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › PHD_Oberon | 0.54 | 42.0 | 3.54e-01 | 85.7% | 54.5% |
| 396482 | 3147.1.1.1 ↗ | a+b two layers › Uncharacterized protein EF_1977 › Uncharacterized protein EF_1977 › Uncharacterized protein EF_1977 › DUF3013 | 0.54 | 38.0 | 3.30e-01 | 73.6% | 57.9% |
| 4024045 | 896.1.1.3 ↗ | a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › SRP9-21 | 0.53 | 38.0 | 4.12e-01 | 87.9% | 93.3% |
| 5049973 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.53 | 37.0 | 3.24e-01 | 73.6% | 55.7% |
| 3183036 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.52 | 41.0 | 3.63e-01 | 84.6% | 57.7% |
| 3540949 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.52 | 41.0 | 2.89e-01 | 85.7% | 66.2% |
| 3186404 | 3441.1.1.2 ↗ | alpha bundles › Bc28.1 › Bc28.1 › Bc28.1 › Pescadillo_N | 0.52 | 40.0 | 3.44e-01 | 81.3% | 80.7% |
| 3831169 | 5.1.5.66 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › FBA_1 | 0.52 | 41.0 | 2.93e-01 | 85.7% | 57.5% |
| 4641056 | 885.1.1.1 ↗ | a+b complex topology › Transcription factor NusA, N-terminal domain › Transcription factor NusA, N-terminal domain › Transcription factor NusA, N-terminal domain › NusA_N | 0.51 | 40.0 | 3.70e-01 | 87.9% | 75.2% |
| 3234330 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.51 | 40.0 | 3.83e-01 | 85.7% | 100.0% |
| 3216657 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.51 | 38.0 | 3.02e-01 | 79.1% | 73.5% |
| 3619473 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.51 | 37.0 | 2.83e-01 | 95.6% | 34.0% |
| 4795566 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.51 | 32.0 | 3.49e-01 | 74.7% | 83.6% |
| 5037595 | 2004.1.1.308 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21 | 0.51 | 39.0 | 2.65e-01 | 85.7% | 59.2% |
| 3652838 | 252.1.1.0 ↗ | a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD | 0.50 | 35.0 | 3.06e-01 | 87.9% | 45.8% |
| 3683264 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.50 | 34.0 | 2.73e-01 | 83.5% | 34.1% |