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NC_042116.1__YP_009624106.1__FDJ41_gp407__00496

Bact-Vir

Identity

Accession:: NC_042116 ↗
Kingdom:: phage

Quality

88.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Eneladusvirus› Yersinia_phage_fHe-Yen9-04

TaxID: 2052742

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-87

PDB

Domain cluster: rep: SRR1747035_scaffold_3_prodigal-single.1__X__X__00216__D3-75

CATH (10)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4uzgA02	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.66	60.0	5.36e-01	100.0%	73.6%
4dloB01	4.10.1240.10	Few Secondary Structures › Irregular › Hormone receptor fold › GPCR, family 2, extracellular hormone receptor domain	0.59	34.0	3.79e-01	75.6%	72.7%
3klqA01	2.60.40.3050	Mainly Beta › Sandwich › Immunoglobulin-like ›	0.59	48.0	4.33e-01	100.0%	64.7%
3ednA01	3.10.310.10	Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1	0.57	44.0	3.84e-01	83.7%	71.6%
8adbA01	3.90.70.120	Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A ›	0.52	44.0	3.41e-01	96.5%	56.0%
3ci0J02	2.10.70.20	Mainly Beta › Ribbon › Complement Module; domain 1 › gspk-gspi-gspj complex like domains	0.52	29.0	3.48e-01	84.9%	90.0%
4pn0C00	3.20.100.10	Alpha Beta › Alpha-Beta Barrel › mRNA Triphosphatase Cet1; Chain A › mRNA triphosphatase Cet1-like	0.52	32.0	2.25e-01	98.8%	21.1%
3d30A02	2.60.40.760	Mainly Beta › Sandwich › Immunoglobulin-like › Expansin, cellulose-binding-like domain	0.51	37.0	3.60e-01	97.7%	69.1%
3tzgA00	2.40.160.150	Mainly Beta › Beta Barrel › Porin ›	0.50	40.0	2.90e-01	83.7%	38.1%
7kpsB01	3.40.630.30	Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT)	0.50	37.0	3.02e-01	81.4%	73.7%

ECOD (14)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4964453	304.8.1.119 ↗	a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF5778	0.72	39.0	3.38e-01	100.0%	36.8%
4086633	6.1.1.1 ↗	beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › FGF	0.70	49.0	3.98e-01	72.1%	77.5%
5013584	331.1.1.0 ↗	a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like	0.67	27.0	2.95e-01	94.2%	42.9%
3736867	708.1.2.6 ↗	beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › GFA	0.60	32.0	2.70e-01	100.0%	30.2%
4971509	4.6.1.2 ↗	beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC	0.58	33.0	3.56e-01	95.3%	65.3%
5016503	77.1.1.0 ↗	beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein	0.57	50.0	4.64e-01	100.0%	76.4%
4639306	109.4.1.1255 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N, Cnd1	0.57	40.0	2.43e-01	75.6%	25.9%
3695189	207.1.1.0 ↗	beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats	0.56	47.0	3.35e-01	91.9%	42.3%
5033670	2003.1.1.51 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › DFP	0.55	46.0	3.50e-01	93.0%	88.9%
3939881	4.8.1.0 ↗	beta barrels › SH3 › Chromo domain-like › Chromo domain-like	0.52	32.0	3.45e-01	100.0%	70.7%
4948943	243.3.1.0 ↗	a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin	0.52	34.0	3.62e-01	98.8%	74.4%
4954718	213.1.1.1 ↗	a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1	0.52	38.0	3.06e-01	79.1%	75.3%
3076054	210.1.2.2 ↗	a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › CBAH	0.52	44.0	3.03e-01	96.5%	46.7%
3785531	2004.1.1.0 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases	0.50	42.0	2.79e-01	98.8%	26.1%