←Back to structures
NC_042119.1__YP_009624282.1__FDJ44_gp27__00027
Bact-VirNC_042119.1__YP_009624282.1__FDJ44_gp27__00027
Identity
- Accession:
- NC_042119 ↗
- Kingdom:
- phage
Quality
66.9
mean pLDDT
Taxonomy
TaxID: 2099444
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 13-62
Domain cluster:
representative
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4e4eA01 | 1.10.287.990 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain | 0.79 | 56.0 | 5.01e-01 | 80.0% | 53.5% |
| 5mdtA00 | 1.25.40.90 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.78 | 69.0 | 4.86e-01 | 100.0% | 32.9% |
| 4rg8A04 | 1.10.287.1240 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.74 | 53.0 | 4.98e-01 | 82.0% | 62.9% |
| 4abmD00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.74 | 54.0 | 4.73e-01 | 80.0% | 75.3% |
| 2mtqA00 | 1.20.58.130 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.73 | 61.0 | 5.51e-01 | 100.0% | 80.8% |
| 3r84A00 | 1.10.287.3490 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.72 | 54.0 | 4.62e-01 | 82.0% | 65.4% |
| 1kpsB00 | 1.25.40.200 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ran-GTPase activating protein 1, C-terminal domain | 0.70 | 60.0 | 4.29e-01 | 100.0% | 32.7% |
| 4kb2A01 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.68 | 56.0 | 4.52e-01 | 100.0% | 82.6% |
| 3t46A00 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.67 | 46.0 | 4.11e-01 | 78.0% | 49.3% |
| 4nv0A02 | 1.10.150.340 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Pyrimidine 5'-nucleotidase (UMPH-1), N-terminal domain | 0.66 | 46.0 | 4.05e-01 | 78.0% | 52.4% |
| 2gutA00 | 1.10.246.20 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Coactivator CBP, KIX domain | 0.63 | 44.0 | 3.81e-01 | 76.0% | 48.1% |
| 3h36A00 | 1.10.10.400 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain | 0.62 | 51.0 | 4.55e-01 | 100.0% | 89.7% |
| 4mk3A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.62 | 49.0 | 4.00e-01 | 100.0% | 67.0% |
| 2aswA00 | 1.10.8.500 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › HAMP domain in histidine kinase | 0.62 | 47.0 | 4.54e-01 | 100.0% | 75.0% |
| 2mpnA00 | 6.10.140.1340 | Special › Helix non-globular › Helix Hairpins › | 0.61 | 41.0 | 3.78e-01 | 70.0% | 77.9% |
| 1e6cA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.59 | 48.0 | 3.36e-01 | 96.0% | 27.1% |
| 2wmmA01 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.59 | 43.0 | 4.34e-01 | 84.0% | 87.8% |
| 4go1A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 42.0 | 4.16e-01 | 82.0% | 75.9% |
| 2js5A00 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.55 | 42.0 | 3.86e-01 | 90.0% | 94.4% |
| 2x48A00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.55 | 42.0 | 4.16e-01 | 96.0% | 79.6% |
| 3h0dB02 | 1.10.1200.150 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Transcriptional repressor of class III stress genes, C-terminal domain | 0.54 | 39.0 | 3.46e-01 | 88.0% | 50.6% |
| 2icwG02 | 1.10.10.530 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › mam-mhc complex, Chain D, Domain 2 | 0.50 | 39.0 | 3.48e-01 | 100.0% | 66.3% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4996260 | 101.1.2.135 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR_2 | 0.84 | 75.0 | 5.25e-01 | 100.0% | 92.3% |
| 3259874 | 109.4.1.471 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › GCFC | 0.82 | 70.0 | 4.11e-01 | 100.0% | 13.3% |
| 3563272 | 375.1.1.202 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Tmemb_55A | 0.81 | 60.0 | 5.89e-01 | 80.0% | 72.7% |
| 3865887 | 632.1.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain | 0.81 | 61.0 | 5.04e-01 | 80.0% | 50.6% |
| 3235616 | 109.4.1.471 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › GCFC | 0.80 | 70.0 | 4.09e-01 | 100.0% | 13.6% |
| 4048066 | 109.4.1.471 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › GCFC | 0.79 | 69.0 | 4.51e-01 | 100.0% | 25.0% |
| 3426842 | 109.4.1.471 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › GCFC | 0.77 | 67.0 | 4.30e-01 | 100.0% | 23.3% |
| 5029911 | 604.3.1.0 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain | 0.77 | 67.0 | 6.39e-01 | 100.0% | 91.5% |
| 3220017 | 174.1.1.13 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › DUF2700 | 0.76 | 56.0 | 4.00e-01 | 80.0% | 28.3% |
| 3731535 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.74 | 56.0 | 4.44e-01 | 82.0% | 43.0% |
| 4464578 | 650.1.1.1 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ | 0.73 | 65.0 | 5.80e-01 | 100.0% | 82.9% |
| 4014485 | 5044.1.1.0 ↗ | extended segments › PsbZ-like › PsbZ-like › PsbZ-like | 0.73 | 56.0 | 4.54e-01 | 84.0% | 45.3% |
| 3431415 | 6155.1.1.6 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › DUF2921 | 0.69 | 60.0 | 5.08e-01 | 100.0% | 75.3% |
| 3595071 | 650.1.1.0 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain | 0.69 | 59.0 | 4.84e-01 | 100.0% | 82.1% |
| 3532712 | 603.2.1.1 ↗ | alpha bundles › STAT-like › STAT › STAT › STAT_alpha | 0.66 | 55.0 | 3.79e-01 | 100.0% | 50.3% |
| 3960445 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.62 | 45.0 | 4.17e-01 | 78.0% | 72.3% |
| 4061821 | 604.9.1.1 ↗ | alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Ribosomal_S20p | 0.62 | 52.0 | 4.57e-01 | 100.0% | 62.5% |
| 3727274 | 3758.1.1.69 ↗ | alpha bundles › Bacterial hemolysins-like › Bacterial hemolysins › Bacterial hemolysins › PF30554 | 0.62 | 46.0 | 3.06e-01 | 86.0% | 18.7% |
| 5055834 | 3009.2.1.0 ↗ | alpha arrays › Insertion subdomain in DsbA-like › STAC domain › STAC domain | 0.61 | 54.0 | 4.58e-01 | 98.0% | 88.7% |
| 3215718 | 5069.1.3.0 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits | 0.60 | 43.0 | 3.88e-01 | 82.0% | 75.0% |
| 3412191 | 632.1.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain | 0.57 | 40.0 | 3.50e-01 | 82.0% | 45.9% |