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NC_042119.1__YP_009624283.1__FDJ44_gp28__00028

Bact-Vir

NC_042119.1__YP_009624283.1__FDJ44_gp28__00028

Identity

Accession:
NC_042119 ↗
Kingdom:
phage

Quality

91.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-53
PDB
Domain cluster: representative
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4a17H02 3.30.60.300 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.75 43.0 4.78e-01 78.4% 74.4%
3to7A03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 56.0 4.80e-01 84.3% 54.3%
1zarA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 53.0 4.45e-01 84.3% 53.9%
5tjjA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 50.0 4.40e-01 78.4% 53.4%
6oinA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 55.0 5.03e-01 92.2% 67.2%
6jgwA01 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.68 57.0 4.46e-01 100.0% 43.0%
4r24B00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.66 55.0 4.78e-01 100.0% 60.0%
3dgpA00 3.30.70.2610 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.66 56.0 5.34e-01 100.0% 80.6%
3axsA02 3.30.56.70 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › N2,N2-dimethylguanosine tRNA methyltransferase, C-terminal domain 0.65 54.0 5.12e-01 100.0% 81.5%
3fxqB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 50.0 4.18e-01 84.3% 61.1%
2wteA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 50.0 4.49e-01 84.3% 65.3%
2lxwA00 6.10.250.1730 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.64 35.0 3.45e-01 100.0% 43.6%
2a61B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 46.0 3.53e-01 84.3% 35.8%
2e1mA05 1.10.405.10 Mainly Alpha › Orthogonal Bundle › Guanine Nucleotide Dissociation Inhibitor; domain 1 › Guanine Nucleotide Dissociation Inhibitor, domain 1 0.63 44.0 3.71e-01 84.3% 42.9%
4mtdD01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 43.0 3.78e-01 76.5% 53.4%
1hc7A01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.62 47.0 3.03e-01 84.3% 85.9%
3u21A00 1.10.10.2430 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NFRKB winged helix-like domain 0.62 53.0 4.13e-01 96.1% 92.7%
3weeB03 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.60 45.0 3.50e-01 82.4% 93.0%
4qjvA03 3.30.70.3110 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 45.0 4.25e-01 100.0% 67.7%
2zo4A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 41.0 4.22e-01 78.4% 89.8%
2wyoC01 3.30.1490.250 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.59 45.0 3.76e-01 90.2% 58.7%
3cdhA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 47.0 3.50e-01 90.2% 36.6%
1stzA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 42.0 3.73e-01 84.3% 62.4%
5flmE01 3.40.1340.10 Alpha Beta › 3-Layer(aba) Sandwich › Dna-directed Rna Polymerases I, Ii, And Iii 27 Kd Polypeptide; Chain: A; domain 1 › RNA polymerase, Rpb5, N-terminal domain 0.58 44.0 3.28e-01 84.3% 89.0%
1c4zA01 3.90.1750.10 Alpha Beta › Alpha-Beta Complex › Hect, E3 ligase catalytic domain fold › Hect, E3 ligase catalytic domains 0.57 39.0 2.85e-01 74.5% 53.1%
3j7aY00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 40.0 3.06e-01 84.3% 42.9%
1xjuA00 1.10.530.40 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.55 47.0 3.39e-01 100.0% 43.6%
2i8eA01 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 44.0 4.05e-01 100.0% 66.2%
1dpeA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.55 40.0 3.13e-01 80.4% 97.5%
1yuiA00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.54 31.0 3.07e-01 100.0% 48.1%
7oslA02 3.40.50.12790 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › FHIPEP family, domain 4 0.54 37.0 3.08e-01 74.5% 40.0%
3ezjA03 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.54 43.0 4.29e-01 98.0% 92.7%
2xfvA00 3.10.260.30 Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › 0.54 41.0 3.49e-01 98.0% 60.2%
3bjoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 43.0 3.51e-01 94.1% 51.5%
5b3hC01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.53 31.0 3.16e-01 100.0% 52.1%
2auwA01 3.30.2020.10 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › NE0471-like N-terminal domain 0.53 42.0 3.78e-01 100.0% 82.9%
4fleA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 43.0 2.96e-01 98.0% 87.7%
2wa0A02 1.10.10.1210 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › MAGE homology domain, winged helix WH2 motif 0.52 36.0 3.04e-01 82.4% 67.3%
4f9cA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.51 41.0 2.93e-01 100.0% 59.2%
ECOD (76)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1827815 101.1.9.17 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.72 61.0 5.66e-01 100.0% 76.5%
3315837 148.1.3.276 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Myb_DNA-bind_3 0.71 51.0 4.73e-01 80.4% 60.0%
3936152 3696.1.1.0 a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related 0.71 55.0 4.71e-01 100.0% 52.9%
3296786 101.1.1.121 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.70 49.0 3.84e-01 76.5% 32.5%
3367461 101.1.1.121 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.70 49.0 3.77e-01 76.5% 31.2%
4096952 101.1.9.17 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.67 55.0 4.45e-01 100.0% 44.3%
4932995 101.1.9.16 alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.67 52.0 5.27e-01 92.2% 94.0%
5064906 101.1.9.17 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.67 54.0 5.33e-01 98.0% 89.1%
3302118 327.16.1.16 a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › Myb_DNA-bind_3 0.66 48.0 4.39e-01 78.4% 58.6%
4773815 4340.1.1.2 a+b complex topology › TFB5-related › TFB5-related › TFB5-related › Tfb2_C 0.66 56.0 5.34e-01 100.0% 80.6%
3661482 4120.1.1.56 few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP › Myb_DNA-bind_3 0.66 48.0 4.30e-01 84.3% 55.0%
3229861 3696.1.1.1 a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › HARP 0.65 50.0 4.63e-01 100.0% 65.7%
4026891 101.1.15.1 alpha arrays › HTH › HTH › HAT1, C-terminal domain › MOZ_SAS 0.64 51.0 4.18e-01 84.3% 51.1%
None 0.64 54.0 3.11e-01 96.1% 25.4%
3357520 310.2.1.28 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › Myb_DNA-bind_3 0.64 48.0 4.16e-01 84.3% 94.1%
3309169 101.1.1.121 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.64 46.0 3.52e-01 78.4% 30.8%
3744638 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.64 55.0 4.80e-01 100.0% 67.5%
4991995 3696.1.1.2 a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › XPB_DRD 0.63 52.0 4.95e-01 98.0% 80.0%
3419597 101.1.1.121 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.63 44.0 3.45e-01 76.5% 31.2%
5079289 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 47.0 3.83e-01 84.3% 44.8%
4575225 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 50.0 4.11e-01 98.0% 98.2%
3470093 3696.1.1.1 a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › HARP 0.63 49.0 4.69e-01 94.1% 89.2%
4679870 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 46.0 3.91e-01 84.3% 52.6%
3703451 101.1.15.0 alpha arrays › HTH › HTH › HAT1, C-terminal domain 0.63 52.0 4.32e-01 92.2% 55.6%
5010613 3696.1.1.0 a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related 0.63 49.0 4.62e-01 100.0% 70.8%
3636544 2004.1.1.189 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_16 0.62 53.0 3.33e-01 100.0% 21.0%
3286535 101.1.2.494 alpha arrays › HTH › HTH › winged helix domain › PF25873 0.62 47.0 4.20e-01 92.2% 62.4%
3652603 101.1.2.516 alpha arrays › HTH › HTH › winged helix domain › PF25895 0.62 47.0 3.85e-01 90.2% 49.1%
5011299 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 54.0 4.18e-01 100.0% 87.8%
3741490 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.62 51.0 4.47e-01 100.0% 63.5%
5072082 2003.1.2.40 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_oxidored 0.61 50.0 2.97e-01 96.1% 20.8%
3272054 2498.1.1.23 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M49 0.61 51.0 2.98e-01 98.0% 25.7%
5006819 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.61 45.0 3.81e-01 84.3% 51.6%
3832037 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.61 45.0 2.91e-01 84.3% 21.8%
3998582 3696.1.1.1 a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › HARP 0.61 46.0 4.29e-01 100.0% 65.7%
3533206 3696.1.1.1 a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › HARP 0.60 48.0 4.61e-01 98.0% 86.2%
4028694 306.3.1.0 a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like 0.60 48.0 4.50e-01 100.0% 72.3%
4017591 101.1.2.520 alpha arrays › HTH › HTH › winged helix domain › DUF7779 0.60 44.0 3.96e-01 84.3% 61.3%
4943120 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 47.0 3.90e-01 92.2% 54.0%
4807860 304.48.1.11 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RNA_pol 0.60 45.0 3.11e-01 84.3% 22.3%
3601561 101.1.15.0 alpha arrays › HTH › HTH › HAT1, C-terminal domain 0.59 49.0 4.12e-01 92.2% 56.8%
3972274 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 45.0 3.92e-01 90.2% 57.8%
4526098 3696.1.1.1 a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › HARP 0.59 47.0 4.27e-01 98.0% 71.2%
5049796 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 44.0 4.35e-01 84.3% 85.5%
3268630 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 42.0 3.55e-01 78.4% 53.7%
4934857 101.1.2.927 alpha arrays › HTH › HTH › winged helix domain › DUF7347 0.59 43.0 3.80e-01 84.3% 65.9%
5031515 101.1.2.927 alpha arrays › HTH › HTH › winged helix domain › DUF7347 0.59 43.0 3.68e-01 84.3% 54.7%
3213610 3525.1.1.0 alpha arrays › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain 0.59 49.0 4.73e-01 100.0% 88.3%
3491271 101.1.15.1 alpha arrays › HTH › HTH › HAT1, C-terminal domain › MOZ_SAS 0.58 52.0 4.34e-01 98.0% 63.5%
3926999 101.1.15.0 alpha arrays › HTH › HTH › HAT1, C-terminal domain 0.58 52.0 4.37e-01 98.0% 61.2%
3324543 4121.1.1.2 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › MRS2-like 0.58 43.0 2.72e-01 82.4% 15.3%
3409500 3696.1.1.1 a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › HARP 0.58 46.0 4.33e-01 98.0% 82.9%
5027627 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.58 45.0 4.51e-01 100.0% 94.5%
3725940 101.1.15.0 alpha arrays › HTH › HTH › HAT1, C-terminal domain 0.57 49.0 4.20e-01 98.0% 67.1%
3173825 101.1.2.183 alpha arrays › HTH › HTH › winged helix domain › MUS81-like_WH 0.57 43.0 3.70e-01 90.2% 83.2%
3201764 101.1.15.1 alpha arrays › HTH › HTH › HAT1, C-terminal domain › MOZ_SAS 0.57 50.0 3.82e-01 98.0% 50.4%
3670391 4121.1.1.2 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › MRS2-like 0.57 42.0 2.66e-01 84.3% 13.9%
4931665 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 46.0 4.08e-01 92.2% 62.7%
3801001 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 41.0 3.12e-01 84.3% 45.5%
4319999 101.1.2.111 alpha arrays › HTH › HTH › winged helix domain › RQC 0.56 43.0 3.70e-01 92.2% 80.0%
4420420 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 42.0 3.67e-01 90.2% 60.0%
3786640 101.1.15.0 alpha arrays › HTH › HTH › HAT1, C-terminal domain 0.55 46.0 3.64e-01 98.0% 49.6%
2760149 101.1.15.1 alpha arrays › HTH › HTH › HAT1, C-terminal domain › MOZ_SAS 0.55 49.0 3.98e-01 98.0% 62.0%
4956033 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 39.0 3.34e-01 82.4% 89.0%
379864 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.54 39.0 3.12e-01 84.3% 42.2%
None 0.54 41.0 3.38e-01 92.2% 74.5%
3478717 101.1.2.392 alpha arrays › HTH › HTH › winged helix domain › SNRNP200_wHTH 0.53 41.0 3.31e-01 92.2% 71.3%
4241356 101.1.2.280 alpha arrays › HTH › HTH › winged helix domain › HTH_12 0.53 42.0 3.63e-01 98.0% 74.7%
4014086 109.4.1.777 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 39.0 2.53e-01 90.2% 27.8%
4011979 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 42.0 3.33e-01 100.0% 54.4%
3498926 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.52 30.0 3.31e-01 98.0% 68.6%
3582740 5001.1.1.7 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Frizzled 0.52 43.0 2.89e-01 94.1% 38.2%
4022653 101.1.2.520 alpha arrays › HTH › HTH › winged helix domain › DUF7779 0.51 38.0 3.26e-01 92.2% 69.5%
3237702 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 39.0 3.42e-01 90.2% 69.4%
4013299 109.4.1.1304 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8, TPR_10, TPR_12 0.51 38.0 2.28e-01 90.2% 10.2%
5063358 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 38.0 3.21e-01 90.2% 79.0%