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NC_042119.1__YP_009624312.1__FDJ44_gp57__00057

Bact-Vir

NC_042119.1__YP_009624312.1__FDJ44_gp57__00057

Identity

Accession:
NC_042119 ↗
Kingdom:
phage

Quality

68.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pikminvirus› Microbacterium_phage_Pikmin

TaxID: 2099444

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-72
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2bkoA02 3.30.70.1450 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Regulator of K+ conductance, C-terminal domain 0.65 45.0 4.13e-01 100.0% 56.8%
2p84A02 2.30.30.290 Mainly Beta › Roll › SH3 type barrels. › YopX-like domains 0.63 51.0 4.85e-01 88.9% 83.6%
7b5tC01 3.30.70.1450 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Regulator of K+ conductance, C-terminal domain 0.62 43.0 4.15e-01 100.0% 64.8%
2gfoA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.62 49.0 3.13e-01 90.5% 23.0%
3isxA02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.61 50.0 4.52e-01 93.7% 94.4%
3be3A00 2.30.30.320 Mainly Beta › Roll › SH3 type barrels. › DUF1653-like domain 0.60 46.0 4.35e-01 82.5% 94.7%
7agvB01 3.30.70.1450 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Regulator of K+ conductance, C-terminal domain 0.59 42.0 3.93e-01 100.0% 59.3%
1whjA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.58 45.0 3.90e-01 85.7% 80.4%
1l4dB00 3.10.20.180 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.56 47.0 4.02e-01 100.0% 64.3%
4uzgA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 49.0 4.01e-01 100.0% 63.6%
4ec7A00 2.10.90.10 Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines 0.55 39.0 3.36e-01 76.2% 80.6%
3fyfA00 2.40.128.410 Mainly Beta › Beta Barrel › Lipocalin › 0.55 41.0 3.15e-01 81.0% 73.8%
6oqrA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.54 46.0 4.17e-01 96.8% 67.8%
5ejrA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 38.0 3.61e-01 76.2% 91.3%
2wssA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.54 45.0 4.04e-01 96.8% 66.7%
2wozA00 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.53 36.0 2.38e-01 73.0% 80.5%
1pwaA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.53 36.0 3.06e-01 74.6% 92.7%
3uc2A00 2.60.40.3340 Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4426 0.52 45.0 3.67e-01 100.0% 70.2%
2vxtI00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.52 40.0 3.02e-01 84.1% 98.1%
3qijB03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 36.0 3.30e-01 74.6% 84.3%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 37.0 3.13e-01 82.5% 79.8%
1b98A00 2.10.90.10 Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines 0.51 36.0 3.11e-01 76.2% 82.5%
1wdiA02 2.40.10.240 Mainly Beta › Beta Barrel › Thrombin, subunit H › QueA-like 0.50 35.0 3.42e-01 76.2% 95.9%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5038591 4261.1.1.0 ↗ a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like 0.69 47.0 4.46e-01 96.8% 60.0%
3587987 4261.1.1.1 ↗ a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C 0.65 45.0 4.15e-01 100.0% 55.3%
5013892 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 47.0 4.97e-01 81.0% 100.0%
5002449 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 49.0 5.16e-01 85.7% 98.2%
4972823 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 46.0 5.05e-01 85.7% 100.0%
3989977 4261.1.1.1 ↗ a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C 0.62 42.0 3.83e-01 100.0% 51.8%
4994957 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 46.0 4.86e-01 79.4% 98.2%
4952887 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 47.0 4.99e-01 84.1% 98.2%
4795566 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.62 44.0 4.39e-01 77.8% 98.5%
3252873 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.62 45.0 3.92e-01 96.8% 49.5%
4943047 267.1.1.3 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.61 45.0 3.09e-01 77.8% 99.5%
4141904 4261.1.1.1 ↗ a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C 0.61 43.0 3.91e-01 100.0% 53.3%
4942897 4261.1.1.1 ↗ a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C 0.59 41.0 3.77e-01 100.0% 54.1%
3970136 241.2.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like 0.56 42.0 3.65e-01 82.5% 85.7%
4880562 5.1.3.26 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_2 0.56 42.0 2.62e-01 85.7% 30.7%
4946539 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.55 45.0 4.34e-01 93.7% 78.7%
4263366 2004.1.1.219 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PriA_CRR 0.54 40.0 2.79e-01 84.1% 41.6%
4338996 375.1.1.60 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PriA_CRR 0.53 36.0 3.73e-01 71.4% 95.0%
3257319 221.1.1.4 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 0.53 45.0 3.97e-01 100.0% 68.0%
4223427 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.53 37.0 2.52e-01 74.6% 22.7%
None — 0.53 36.0 2.96e-01 73.0% 60.0%
3385436 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 35.0 2.45e-01 71.4% 24.6%
3799652 4184.1.1.2 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.51 41.0 3.70e-01 93.7% 69.5%
1890446 1.1.7.45 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › eEFSec_4th 0.51 44.0 3.80e-01 100.0% 78.1%
4367584 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.50 36.0 2.26e-01 81.0% 20.2%