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NC_042122.1__YP_009624473.1__FDJ47_gp40__00040

Bact-Vir

NC_042122.1__YP_009624473.1__FDJ47_gp40__00040

Identity

Accession:
NC_042122 ↗
Kingdom:
phage

Quality

91.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-65
PDB
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4obiA00 2.60.320.10 Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › N-utilization substance G protein NusG, insert domain 0.74 50.0 4.53e-01 71.4% 72.4%
3nvnA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.72 53.0 3.23e-01 77.8% 17.5%
1jyoA00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.72 54.0 4.21e-01 79.4% 67.7%
6c1zA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.70 57.0 4.37e-01 87.3% 92.0%
1vr8A00 3.40.1000.20 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › TM1622-like 0.69 49.0 3.83e-01 77.8% 34.8%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.67 50.0 4.43e-01 77.8% 80.5%
3r7wB02 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.66 41.0 3.29e-01 92.1% 33.9%
2gcjA01 2.30.29.150 Mainly Beta › Roll › PH-domain like › 0.66 52.0 4.06e-01 98.4% 40.3%
1y4wA02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.63 53.0 3.93e-01 92.1% 88.9%
2mqdA00 3.30.1460.60 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.63 51.0 4.19e-01 90.5% 96.6%
3a7sA00 3.40.532.10 Alpha Beta › 3-Layer(aba) Sandwich › Ubiquitin C-terminal Hydrolase UCH-l3 › Peptidase C12, ubiquitin carboxyl-terminal hydrolase 0.62 51.0 3.68e-01 95.2% 75.0%
3pijA02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.62 52.0 3.95e-01 92.1% 77.2%
4ci8A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 53.0 3.45e-01 100.0% 55.9%
3cwxA00 3.40.1420.20 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › Pathogenicity island component CagD 0.62 50.0 4.16e-01 96.8% 52.8%
3ww7A00 2.40.10.500 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.62 46.0 4.22e-01 79.4% 84.1%
7obmA01 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.62 53.0 3.42e-01 100.0% 53.9%
2jd4A02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.62 49.0 3.62e-01 88.9% 69.9%
3tc9A02 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.61 48.0 3.03e-01 84.1% 23.8%
3k6qA02 3.30.160.620 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.61 43.0 3.79e-01 73.0% 52.8%
7dpyB01 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.61 45.0 4.17e-01 81.0% 98.8%
3kf3A02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.60 50.0 3.71e-01 95.2% 71.8%
3os7A00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.60 47.0 2.95e-01 84.1% 16.0%
3asiA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.60 53.0 3.77e-01 96.8% 70.8%
7mhuA01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.60 50.0 3.12e-01 93.7% 49.9%
3o4hA01 2.130.10.150 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Peptidase/esterase 'gauge' domain 0.60 51.0 3.37e-01 100.0% 62.0%
3bdrA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 46.0 3.59e-01 87.3% 89.7%
2yztA00 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.60 42.0 4.15e-01 73.0% 81.8%
2ix2B00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.60 52.0 3.46e-01 95.2% 86.9%
4fffA02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.60 50.0 3.75e-01 92.1% 74.5%
1xd3C00 3.40.532.10 Alpha Beta › 3-Layer(aba) Sandwich › Ubiquitin C-terminal Hydrolase UCH-l3 › Peptidase C12, ubiquitin carboxyl-terminal hydrolase 0.59 47.0 3.29e-01 90.5% 75.8%
3dasA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.59 50.0 3.23e-01 100.0% 59.6%
1lfoA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 45.0 3.73e-01 87.3% 61.4%
4eqvA02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.59 51.0 3.71e-01 96.8% 92.6%
2wjsA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.59 47.0 3.52e-01 92.1% 77.1%
2wdtC02 3.30.1490.420 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ubiquitin carboxyl-terminal hydrolase, domain 2 0.59 47.0 4.10e-01 92.1% 69.3%
3a54A01 2.40.50.340 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 40.0 3.58e-01 71.4% 74.4%
3ligA02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.58 48.0 3.55e-01 92.1% 72.8%
5mc9A02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.58 45.0 3.34e-01 87.3% 72.0%
1cruA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.58 47.0 2.91e-01 95.2% 42.6%
4nsxA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 49.0 3.18e-01 100.0% 46.1%
4osnA00 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.56 49.0 4.07e-01 96.8% 70.9%
2ltrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.56 41.0 3.50e-01 77.8% 83.8%
3fvcA03 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.56 49.0 4.04e-01 96.8% 69.1%
2qm4A01 2.170.210.10 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal 0.55 45.0 3.53e-01 93.7% 62.9%
2af5A01 2.40.128.160 Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) 0.54 38.0 4.00e-01 79.4% 85.2%
3fqmA01 2.20.25.210 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › Hepatitis C NS5A, domain 1B 0.52 34.0 3.46e-01 84.1% 68.9%
7nn3B01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 42.0 2.67e-01 90.5% 35.7%
4hadB02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.51 45.0 3.15e-01 96.8% 96.4%
ECOD (71)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3603731 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.81 74.0 5.64e-01 100.0% 45.0%
4983234 298.1.1.24 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.79 55.0 3.85e-01 73.0% 68.1%
3935357 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.75 60.0 4.75e-01 85.7% 60.8%
4998507 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.74 59.0 6.33e-01 84.1% 100.0%
4466450 63.1.1.0 beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain 0.73 56.0 4.31e-01 82.5% 77.9%
3520868 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.71 56.0 4.33e-01 85.7% 57.1%
4971601 241.14.1.0 a+b two layers › Type III secretory system chaperone-like › SARS-unique domain-C › SARS-unique domain-C 0.71 54.0 5.29e-01 84.1% 74.3%
4309285 3844.2.1.2 a+b two layers › hydrogenase expression protein-like › MybT EspG5 chaperone › MybT EspG5 chaperone › DUF5081 0.70 55.0 3.93e-01 85.7% 29.7%
3796352 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.70 55.0 5.45e-01 84.1% 93.8%
3512735 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.70 58.0 3.92e-01 90.5% 59.6%
3238801 2484.1.1.200 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.69 61.0 3.64e-01 96.8% 25.3%
3480535 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.69 53.0 4.40e-01 81.0% 63.8%
3217981 2484.1.1.200 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.69 59.0 4.34e-01 96.8% 37.1%
3228995 2484.1.1.200 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.68 61.0 3.54e-01 100.0% 24.8%
3925754 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.68 51.0 3.99e-01 81.0% 37.8%
3995797 220.1.1.160 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_MADD 0.68 50.0 4.99e-01 77.8% 93.8%
3468148 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.68 47.0 3.37e-01 84.1% 24.1%
3263647 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.68 54.0 4.31e-01 92.1% 45.0%
3239485 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.67 59.0 4.64e-01 96.8% 49.2%
3440815 5.1.11.35 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › Beta-prop_AT5G49610-like 0.67 59.0 3.74e-01 100.0% 57.9%
3999169 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.67 54.0 3.37e-01 87.3% 29.9%
3929729 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.66 53.0 3.75e-01 87.3% 68.7%
3228484 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.66 57.0 3.79e-01 96.8% 34.1%
3244934 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.66 53.0 3.34e-01 87.3% 17.9%
4960303 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.66 50.0 4.33e-01 81.0% 75.8%
3233005 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.65 55.0 3.71e-01 96.8% 35.7%
3211176 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.65 56.0 3.73e-01 96.8% 35.7%
3234981 633.23.1.4 alpha bundles › Bromodomain-like › Claudin › Claudin › Claudin_2 0.64 53.0 3.71e-01 92.1% 62.4%
3222321 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.64 54.0 3.67e-01 98.4% 35.7%
4304372 239.3.1.1 beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain › Fasciclin 0.64 44.0 3.36e-01 84.1% 30.1%
3227136 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.64 55.0 3.81e-01 96.8% 41.4%
3225057 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.64 55.0 3.93e-01 96.8% 48.1%
3228574 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.63 54.0 3.63e-01 98.4% 35.0%
3247669 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.63 53.0 3.60e-01 96.8% 41.7%
3212555 2484.1.1.200 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.63 54.0 4.32e-01 98.4% 85.4%
3277345 7512.1.1.4 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_10 0.62 53.0 3.28e-01 100.0% 34.6%
3219544 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.62 53.0 3.46e-01 96.8% 27.4%
3235669 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.62 53.0 4.29e-01 96.8% 68.8%
4969758 7089.1.1.0 a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.62 44.0 3.96e-01 76.2% 61.1%
5013176 4100.1.1.0 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.62 50.0 4.72e-01 87.3% 88.0%
4951147 881.4.1.0 a+b three layers › Mog1p/PsbP-like › C-terminal domain in sigma-E factor regulatory protein rseB › C-terminal domain in sigma-E factor regulatory protein rseB 0.62 46.0 3.74e-01 79.4% 41.7%
3242542 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.62 53.0 3.58e-01 98.4% 35.3%
5081947 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.61 51.0 3.34e-01 100.0% 64.5%
3878495 633.23.1.1 alpha bundles › Bromodomain-like › Claudin › Claudin › PMP22_Claudin 0.61 52.0 3.57e-01 93.7% 64.2%
3533183 220.1.1.22 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.61 47.0 4.08e-01 85.7% 66.0%
4105812 10.1.1.26 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_32C 0.60 51.0 3.97e-01 95.2% 73.4%
3453949 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.60 46.0 2.97e-01 85.7% 84.7%
3643793 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.59 50.0 3.15e-01 100.0% 57.9%
3172856 5.1.4.575 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF30290 0.59 48.0 3.15e-01 88.9% 43.2%
3212404 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.59 50.0 3.43e-01 98.4% 43.9%
3994644 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 52.0 2.91e-01 100.0% 24.5%
3212280 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 50.0 3.12e-01 100.0% 47.2%
3229102 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.58 48.0 3.34e-01 98.4% 43.6%
4019192 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.58 48.0 3.64e-01 95.2% 97.6%
397140 2.2.1.0 beta barrels › OB-fold › Bacterial enterotoxins › Bacterial enterotoxins 0.58 40.0 3.58e-01 71.4% 76.1%
3616618 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 49.0 3.10e-01 100.0% 54.1%
3515688 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 47.0 3.86e-01 93.7% 60.0%
None 0.57 47.0 3.84e-01 95.2% 90.4%
3996624 5.1.5.164 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_IFT140_1st, Beta-prop_IFT140_2nd 0.57 48.0 3.02e-01 98.4% 39.2%
4666231 9.1.1.14 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › CpeS 0.56 45.0 3.45e-01 96.8% 92.6%
3512368 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.56 49.0 3.63e-01 98.4% 95.2%
4947855 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 47.0 2.89e-01 98.4% 40.5%
3077250 234.3.1.0 a+b two layers › Microbial ribonucleases-like › Colicin D nuclease domain › Colicin D nuclease domain 0.55 39.0 3.59e-01 79.4% 55.7%
3831169 5.1.5.66 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › FBA_1 0.54 45.0 3.06e-01 98.4% 39.6%
5063899 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.54 45.0 3.24e-01 100.0% 74.1%
3260465 219.1.1.6 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Acetyltransf_2 0.54 45.0 2.94e-01 96.8% 26.5%
3820070 5.1.2.62 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › FBA_1 0.54 46.0 3.20e-01 98.4% 43.6%
3431347 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.54 43.0 3.03e-01 98.4% 88.2%
3676609 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.53 45.0 2.95e-01 100.0% 60.3%
3975309 241.1.1.0 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone 0.53 47.0 3.87e-01 98.4% 97.3%
3460976 5.1.3.142 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.51 40.0 2.68e-01 96.8% 67.2%