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NC_042122.1__YP_009624493.1__FDJ47_gp60__00060

Bact-Vir

NC_042122.1__YP_009624493.1__FDJ47_gp60__00060

Identity

Accession:
NC_042122 ↗
Kingdom:
phage

Quality

79.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Drexlerviridae› Eclunavirus› Enterobacter_phage_Ec_L1

TaxID: 2070180

Cluster

View cluster (11 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 41-99
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ic9A02 1.10.287.990 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain 0.65 54.0 5.14e-01 94.9% 88.6%
2vxdA00 1.10.10.2100 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Nucleophosmin, C-terminal domain 0.61 35.0 3.66e-01 84.7% 61.1%
2v4iB01 3.30.2330.10 Alpha Beta › 2-Layer Sandwich › arginine biosynthesis bifunctional protein fold › arginine biosynthesis bifunctional protein suprefamily 0.61 45.0 4.15e-01 98.3% 61.0%
1vraB01 3.30.2330.10 Alpha Beta › 2-Layer Sandwich › arginine biosynthesis bifunctional protein fold › arginine biosynthesis bifunctional protein suprefamily 0.57 45.0 4.11e-01 100.0% 63.5%
2whnA00 1.20.81.30 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › Type II secretion system (T2SS), domain F 0.56 42.0 3.40e-01 78.0% 89.1%
3lbxB01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.55 42.0 3.51e-01 84.7% 47.7%
4i0xG00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.54 40.0 3.94e-01 84.7% 80.9%
2qkdA04 2.60.120.1040 Mainly Beta › Sandwich › Jelly Rolls › ZPR1, A/B domain 0.54 45.0 3.62e-01 100.0% 85.8%
3vkhB01 1.10.287.2620 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.53 37.0 3.65e-01 74.6% 90.6%
2wqlA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 43.0 3.37e-01 98.3% 94.1%
3gnlB02 1.10.287.1890 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.52 39.0 3.78e-01 83.1% 72.1%
1d5aA02 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.52 40.0 2.81e-01 88.1% 94.0%
3fhnA01 6.10.280.210 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dsl1p vesicle tethering complex, Tip20p subunit, domain A 0.52 40.0 2.94e-01 89.8% 39.7%
2hoqA02 1.10.150.520 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.50 44.0 4.03e-01 100.0% 96.2%
1pjrA02 1.10.10.160 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.50 34.0 3.19e-01 72.9% 56.9%
3lnnB03 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.50 37.0 3.63e-01 83.1% 76.1%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3944936 4038.1.1.8 ↗ alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Abc1-like 0.95 89.0 5.43e-01 100.0% 20.3%
3654000 622.4.1.46 ↗ alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related › ASL_C 0.54 39.0 3.82e-01 78.0% 73.8%
5044480 7566.1.1.2 ↗ a/b three-layered sandwiches › HflX family GTPase N-terminal domain › HflX family GTPase N-terminal domain › HflX family GTPase N-terminal domain › GTP-bdg_N 0.53 38.0 2.80e-01 84.7% 26.1%
5064184 150.7.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › PE › PE 0.52 38.0 3.50e-01 83.1% 78.8%
3743598 150.1.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.51 39.0 3.10e-01 83.1% 40.0%
D2 medium residues 100-193
PDB
Domain cluster: rep: MG209611.1__ATW59280.1__Cl131_gp012__00012__D104-225
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF06381.17 best Phage_portal_3 51.9 7.20e-14 100.0% 28.4%
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2e6zA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.69 36.0 4.44e-01 78.7% 81.4%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.67 35.0 4.55e-01 78.7% 97.9%
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.66 38.0 4.19e-01 80.9% 72.2%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.66 42.0 4.86e-01 96.8% 95.2%
2ldmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 36.0 4.50e-01 78.7% 94.3%
2jxbA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 38.0 4.02e-01 78.7% 64.0%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 41.0 4.69e-01 100.0% 87.1%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 37.0 4.19e-01 100.0% 76.5%
2akkA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 39.0 4.28e-01 80.9% 78.4%
1y0mA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 39.0 4.61e-01 80.9% 96.7%
2vknA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 39.0 4.52e-01 97.9% 93.9%
2v1rA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 38.0 4.35e-01 96.8% 89.6%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 34.0 4.06e-01 80.9% 85.5%
3npfB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 39.0 4.49e-01 98.9% 97.0%
1s1nA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 35.0 4.21e-01 80.9% 95.0%
3npfA02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 38.0 4.25e-01 78.7% 88.6%
7razA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 31.0 3.23e-01 79.8% 56.5%
5yrzB00 3.30.920.30 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. 0.56 26.0 3.17e-01 71.3% 67.2%
4p5nA00 2.30.30.1060 Mainly Beta › Roll › SH3 type barrels. › 0.55 35.0 3.87e-01 81.9% 81.1%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 38.0 4.29e-01 96.8% 97.1%
4krtB03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 38.0 4.32e-01 78.7% 100.0%
1dj7B00 2.30.30.50 Mainly Beta › Roll › SH3 type barrels. › 0.54 36.0 4.00e-01 95.7% 87.7%
7k9cA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.50 41.0 4.33e-01 100.0% 95.3%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3948451 4056.1.1.8 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Phage_portal_3 0.86 80.0 7.87e-01 98.9% 100.0%
3164773 4038.1.1.8 ↗ alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Abc1-like 0.85 76.0 7.80e-01 97.9% 98.9%
3942110 4056.1.1.8 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Phage_portal_3 0.77 70.0 6.27e-01 96.8% 82.4%
4034031 4056.1.1.0 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein 0.77 50.0 5.92e-01 86.2% 96.9%
3326132 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 38.0 4.49e-01 78.7% 69.2%
4948250 4.1.1.301 ↗ beta barrels › SH3 › SH3 › SH3 › MJ1316 0.73 43.0 5.05e-01 100.0% 84.6%
5063311 4.1.1.364 ↗ beta barrels › SH3 › SH3 › SH3 › GatD_N 0.69 35.0 4.60e-01 76.6% 97.8%
5039293 4056.1.1.0 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein 0.69 51.0 5.63e-01 95.7% 97.3%
1557493 4056.1.1.6 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › P23-45_portal_barrel 0.65 52.0 5.59e-01 96.8% 98.8%
3621642 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.63 40.0 4.26e-01 83.0% 75.0%
3636812 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.62 40.0 4.64e-01 100.0% 93.8%
3924338 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.62 38.0 4.25e-01 79.8% 81.4%
3898952 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.61 39.0 4.27e-01 83.0% 81.3%
3782038 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 38.0 3.78e-01 95.7% 60.0%
4132516 4.1.1.253 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4537 0.60 37.0 4.01e-01 80.9% 73.8%
3794445 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.60 40.0 4.24e-01 100.0% 78.8%
3563220 4.1.1.220 ↗ beta barrels › SH3 › SH3 › SH3 › BAHCC1-like_Tudor 0.59 36.0 3.86e-01 98.9% 71.2%
4177510 4.1.1.295 ↗ beta barrels › SH3 › SH3 › SH3 › KOW, Ribosomal_L26 0.59 43.0 3.89e-01 100.0% 56.8%
3481770 4.1.1.220 ↗ beta barrels › SH3 › SH3 › SH3 › BAHCC1-like_Tudor 0.58 36.0 3.84e-01 80.9% 72.5%
3936225 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 37.0 4.12e-01 100.0% 88.6%
3761318 4.1.1.253 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4537 0.57 36.0 4.00e-01 80.9% 84.3%
3363448 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.55 36.0 3.75e-01 98.9% 71.8%
3304602 4.1.1.427 ↗ beta barrels › SH3 › SH3 › SH3 › F-box 0.53 37.0 3.73e-01 83.0% 71.6%
4012326 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.52 40.0 3.51e-01 83.0% 97.2%
3411858 4.1.1.456 ↗ beta barrels › SH3 › SH3 › SH3 › BAH, BAHCC1-like_Tudor, SH3_TNRC18 0.52 36.0 2.33e-01 98.9% 16.0%
4929162 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.50 30.0 2.70e-01 95.7% 41.5%