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NC_042127.1__YP_009624793.1__FDJ52_gp05__00005

Bact-Vir

NC_042127.1__YP_009624793.1__FDJ52_gp05__00005

Identity

Accession:
NC_042127 ↗
Kingdom:
phage

Quality

80.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Efquatrovirus› Enterococcus_phage_vB_EfaS_AL2

TaxID: 2175688

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-62
PDB
Domain cluster: representative
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.82 63.0 6.26e-01 100.0% 79.0%
3goxA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.80 61.0 6.49e-01 100.0% 94.1%
4ytlA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.80 57.0 6.14e-01 100.0% 90.0%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 59.0 6.00e-01 100.0% 86.0%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.76 56.0 6.11e-01 96.6% 100.0%
2ckkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 59.0 6.22e-01 100.0% 94.3%
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.75 57.0 5.41e-01 100.0% 69.0%
2e6zA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.74 55.0 5.51e-01 100.0% 79.7%
7u32F02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.72 56.0 5.94e-01 100.0% 98.0%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 59.0 5.93e-01 100.0% 94.9%
6ghmC02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 60.0 5.85e-01 100.0% 89.1%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 58.0 5.87e-01 100.0% 93.2%
4fssB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 60.0 5.98e-01 100.0% 93.4%
8jx6A02 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.69 59.0 4.95e-01 98.3% 100.0%
1zuyA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 58.0 5.87e-01 100.0% 98.3%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 58.0 5.39e-01 100.0% 76.0%
1dz1A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.67 54.0 5.13e-01 88.1% 81.4%
6vlfA03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 56.0 5.66e-01 100.0% 96.6%
4epcA02 2.30.30.170 Mainly Beta › Roll › SH3 type barrels. › 0.67 58.0 5.52e-01 98.3% 91.5%
4ld6A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 56.0 4.47e-01 100.0% 47.0%
2d9tA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 49.0 5.15e-01 100.0% 98.0%
1vq8Q00 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.66 56.0 4.85e-01 100.0% 60.0%
2ke9A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 58.0 5.60e-01 100.0% 91.0%
1v1cA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 56.0 5.46e-01 100.0% 91.2%
5ygbA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 53.0 4.80e-01 100.0% 66.3%
2e5kA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 57.0 5.63e-01 100.0% 93.8%
2d9uA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.65 46.0 4.34e-01 76.3% 62.2%
1zuuA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 54.0 5.55e-01 98.3% 100.0%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 55.0 5.23e-01 100.0% 79.2%
3pvlA05 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 56.0 5.21e-01 100.0% 77.6%
5f3yA05 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 56.0 5.17e-01 100.0% 79.2%
2kxcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 53.0 5.19e-01 100.0% 86.6%
6o5cA02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.64 54.0 5.06e-01 100.0% 82.9%
2ytyA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 42.0 3.77e-01 71.2% 76.1%
1oxxK02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 40.0 4.44e-01 71.2% 88.9%
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 51.0 4.26e-01 100.0% 52.8%
6cnhA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.60 39.0 3.61e-01 93.2% 50.0%
4p78C00 3.30.920.30 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. 0.60 44.0 4.27e-01 89.8% 71.2%
1u04A02 3.90.70.180 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.59 50.0 4.13e-01 96.6% 77.7%
2vd5B01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.59 40.0 2.84e-01 71.2% 55.1%
1a15A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 44.0 4.26e-01 84.7% 77.6%
5l37C00 2.40.50.220 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml 0.57 40.0 3.63e-01 76.3% 55.8%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 39.0 3.94e-01 94.9% 73.8%
1jb7A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 45.0 3.72e-01 96.6% 75.9%
4kreA04 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.53 44.0 2.94e-01 96.6% 75.5%
6i4pA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 44.0 3.55e-01 100.0% 98.4%
1fr3A00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.52 40.0 3.90e-01 91.5% 74.6%
3dghA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 43.0 3.56e-01 100.0% 97.6%
1x0tA02 6.20.50.20 Special › Other non-globular › N-terminal domain of TfIIb › 0.51 36.0 4.00e-01 86.4% 100.0%
ECOD (77)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4956443 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 60.0 6.03e-01 100.0% 83.3%
5051313 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 62.0 6.00e-01 100.0% 80.0%
4177200 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.76 57.0 5.87e-01 100.0% 85.5%
4101502 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.76 56.0 5.83e-01 100.0% 87.0%
3256432 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 58.0 5.84e-01 100.0% 83.3%
4208181 4.1.1.70 ↗ beta barrels › SH3 › SH3 › SH3 › Tsr0524-like 0.75 64.0 6.28e-01 100.0% 89.2%
5036498 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.74 56.0 5.20e-01 100.0% 64.0%
2893010 4.1.1.8 ↗ beta barrels › SH3 › SH3 › SH3 › IN_DBD_C 0.74 55.0 5.70e-01 100.0% 87.0%
3483363 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 57.0 5.59e-01 100.0% 78.5%
3328489 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 55.0 5.24e-01 100.0% 68.6%
3622846 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.73 52.0 5.58e-01 100.0% 90.0%
3323558 4.1.1.118 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_15 0.73 60.0 6.01e-01 100.0% 91.7%
3783847 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.72 63.0 6.16e-01 100.0% 89.2%
3488114 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 56.0 4.44e-01 100.0% 41.7%
3481726 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 62.0 6.26e-01 98.3% 95.0%
4138935 4.1.1.241 ↗ beta barrels › SH3 › SH3 › SH3 › NifZ 0.72 63.0 5.87e-01 100.0% 88.0%
3925471 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.71 49.0 4.95e-01 72.9% 78.3%
3236896 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 60.0 5.73e-01 96.6% 80.0%
3512419 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.71 62.0 5.50e-01 100.0% 68.2%
3482868 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.71 58.0 5.98e-01 98.3% 98.2%
2866962 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.71 55.0 4.62e-01 100.0% 48.1%
4012002 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 62.0 5.90e-01 100.0% 84.3%
3251170 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.70 62.0 5.84e-01 98.3% 82.9%
3898672 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 57.0 5.54e-01 96.6% 81.5%
3290564 4.1.1.292 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Rv2311 0.70 61.0 5.35e-01 100.0% 72.2%
3172122 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.70 62.0 6.26e-01 100.0% 98.3%
3898370 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.70 59.0 6.03e-01 100.0% 98.3%
3787905 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.70 61.0 5.85e-01 100.0% 84.3%
4093836 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 54.0 5.39e-01 100.0% 83.3%
4261760 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.69 61.0 5.18e-01 98.3% 71.6%
3656401 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 53.0 4.94e-01 100.0% 66.7%
3475756 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.69 59.0 5.51e-01 100.0% 77.3%
3842441 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.69 57.0 5.73e-01 100.0% 93.3%
3879132 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.69 61.0 5.63e-01 100.0% 81.3%
4501723 4.8.1.45 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Peptidase_U57 0.68 52.0 5.35e-01 100.0% 89.1%
3917464 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 59.0 5.74e-01 100.0% 89.2%
3766868 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.68 59.0 5.15e-01 100.0% 64.4%
3939132 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.68 58.0 4.93e-01 100.0% 58.0%
3486189 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 58.0 5.77e-01 98.3% 95.0%
3408090 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.67 46.0 4.41e-01 96.6% 61.4%
3520811 4.8.1.2 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.67 51.0 4.83e-01 83.1% 70.0%
3895155 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.67 57.0 5.22e-01 100.0% 72.5%
3388887 4.8.1.2 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.67 53.0 5.17e-01 88.1% 84.6%
3607307 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.67 57.0 5.48e-01 100.0% 87.1%
3898170 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.66 59.0 5.44e-01 100.0% 89.3%
2388493 4.8.1.2 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.66 50.0 4.87e-01 81.4% 78.1%
3402542 4.8.1.2 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.66 51.0 4.77e-01 84.7% 68.0%
3557649 4.8.1.20 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › PWP3A-B_N 0.66 54.0 4.51e-01 100.0% 51.4%
3561094 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.66 56.0 5.29e-01 100.0% 81.3%
3750522 4.1.1.218 ↗ beta barrels › SH3 › SH3 › SH3 › PWP3A-B_N 0.65 53.0 4.38e-01 100.0% 49.1%
3538030 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.65 56.0 5.36e-01 100.0% 84.3%
4185893 4.1.1.394 ↗ beta barrels › SH3 › SH3 › SH3 › SlpA 0.65 54.0 5.28e-01 96.6% 96.9%
3408588 4.1.1.243 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Myosin-XVIIIa 0.65 49.0 4.72e-01 100.0% 71.4%
3784770 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.64 56.0 5.23e-01 100.0% 88.0%
4928794 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 45.0 4.98e-01 89.8% 100.0%
3942998 4056.1.1.0 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein 0.64 54.0 5.17e-01 100.0% 81.4%
5032461 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 53.0 5.18e-01 100.0% 86.2%
4949552 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.62 46.0 4.43e-01 83.1% 77.1%
3589730 4.1.1.252 ↗ beta barrels › SH3 › SH3 › SH3 › MdcG_N 0.61 50.0 4.67e-01 100.0% 81.2%
5077487 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.59 45.0 3.49e-01 84.7% 82.1%
4407139 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.58 41.0 2.44e-01 76.3% 60.2%
3616126 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.58 46.0 2.95e-01 93.2% 29.2%
3886993 206.1.1.2 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase,Pkinase_C 0.58 40.0 2.42e-01 72.9% 73.8%
3932096 206.1.1.20 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.57 40.0 2.59e-01 74.6% 31.1%
4983766 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.56 43.0 3.48e-01 84.7% 89.9%
3642524 108.1.1.96 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_6, EF-hand_7 0.56 34.0 2.75e-01 88.1% 28.0%
3670468 4.1.1.332 ↗ beta barrels › SH3 › SH3 › SH3 › Peptidase_C1 0.55 47.0 3.72e-01 100.0% 53.1%
None — 0.55 47.0 3.11e-01 100.0% 60.7%
5016920 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.55 40.0 3.77e-01 83.1% 73.1%
3277727 4.8.1.43 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › RNHCP 0.54 46.0 4.01e-01 100.0% 86.3%
5075670 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 37.0 4.07e-01 91.5% 100.0%
3914097 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.53 42.0 2.68e-01 91.5% 45.0%
3743574 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.52 41.0 2.63e-01 91.5% 38.6%
4970357 2003.1.3.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain 0.52 44.0 2.56e-01 98.3% 10.7%
3997588 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 35.0 2.98e-01 71.2% 79.1%
3166076 2003.1.2.58 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox, Pyr_redox_2 0.51 43.0 2.83e-01 100.0% 40.0%
3804086 5.3.1.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II 0.50 41.0 3.19e-01 93.2% 40.0%