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NC_042131.1__YP_009625529.1__FDJ56_gp17__00017

Bact-Vir

NC_042131.1__YP_009625529.1__FDJ56_gp17__00017

Identity

Accession:
NC_042131 ↗
Kingdom:
phage

Quality

95.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Autoscriptoviridae› Phimunavirus› Pectobacterium_phage_vB_PatP_CB5

TaxID: 1983582

Cluster

View cluster (7 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-81
PDB
Domain cluster: rep: OP056089.1__UYD72102.1__X__00002__D5-102
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13392.13 best HNH_3 40.2 2.80e-10 56.4% 95.7%
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u3eM01 3.90.75.20 Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › 0.82 76.0 6.77e-01 100.0% 82.1%
1a73A00 3.90.75.10 Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › Homing Intron 3 (I-ppo) Encoded Endonuclease; Chain A 0.69 61.0 4.82e-01 100.0% 68.5%
5iz3A01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.57 44.0 3.44e-01 84.6% 51.7%
3tndB01 2.10.260.10 Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › 0.56 31.0 3.78e-01 79.5% 100.0%
4xtvB02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.51 28.0 3.40e-01 83.3% 85.4%
2eayB02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.51 28.0 3.33e-01 83.3% 83.7%
1hxdA03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.51 27.0 3.24e-01 82.1% 86.0%
2d5wA03 3.10.105.10 Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 0.50 42.0 2.96e-01 92.3% 48.4%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3965202 378.1.1.19 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_3 0.90 84.0 7.36e-01 100.0% 90.9%
3586841 378.1.1.7 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › NUMOD4,HNH_3 0.83 76.0 6.63e-01 100.0% 87.0%
3695527 378.1.1.6 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › zf-His_Me_endon 0.61 55.0 4.76e-01 100.0% 83.3%
3217266 11.1.1.532 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C6 0.54 32.0 3.25e-01 82.1% 60.0%
5031480 283.1.1.1 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › Peptidase_M24 0.53 41.0 2.90e-01 84.6% 40.8%
5023855 321.1.1.0 ↗ a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase 0.50 37.0 2.45e-01 80.8% 88.2%
1870422 4337.1.1.0 ↗ a+b two layers › DNA mismatch repair protein MutL dimerization subdomain › DNA mismatch repair protein MutL dimerization subdomain › DNA mismatch repair protein MutL dimerization subdomain 0.50 27.0 3.15e-01 85.9% 78.3%
4965868 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.50 27.0 2.95e-01 84.6% 61.9%
D2 high residues 87-141
PDB
Domain cluster: rep: NC_028835.1__YP_009201837.1__CL2_42__00042__D139-181