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NC_042133.1__YP_009625716.1__FDJ58_gp066__00066

Bact-Vir

NC_042133.1__YP_009625716.1__FDJ58_gp066__00066

Identity

Accession:
NC_042133 ↗
Kingdom:
phage

Quality

92.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Siophivirus› Bacillus_phage_SIOphi

TaxID: 1285382

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-74
PDB
Domain cluster: representative
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.68 56.0 5.33e-01 88.9% 79.5%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 48.0 5.34e-01 88.9% 100.0%
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 45.0 5.09e-01 81.9% 100.0%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 45.0 5.03e-01 98.6% 96.4%
6c6sD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.63 46.0 4.99e-01 98.6% 95.0%
1g29102 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 34.0 4.13e-01 70.8% 86.7%
3htyA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.59 46.0 4.31e-01 86.1% 97.9%
3apuB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 50.0 3.87e-01 100.0% 58.7%
2pm6D01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 39.0 2.68e-01 70.8% 47.1%
1t6lA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.56 39.0 2.72e-01 73.6% 50.2%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.55 37.0 4.11e-01 81.9% 98.1%
3m4pA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 38.0 3.33e-01 73.6% 76.8%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 36.0 3.87e-01 77.8% 80.3%
1cukA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 38.0 3.98e-01 73.6% 95.5%
1jeyB02 2.40.290.10 Mainly Beta › Beta Barrel › Ku70; Chain: A; Domain 2 › 0.53 38.0 2.89e-01 77.8% 84.1%
4csqA00 2.30.29.190 Mainly Beta › Roll › PH-domain like › 0.53 43.0 3.83e-01 95.8% 74.3%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 40.0 3.99e-01 94.4% 82.2%
3o4hA01 2.130.10.150 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Peptidase/esterase 'gauge' domain 0.53 45.0 2.99e-01 94.4% 93.0%
3h6qA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.53 41.0 3.24e-01 87.5% 100.0%
2kieA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.52 41.0 3.56e-01 90.3% 79.8%
1ospO01 2.40.128.160 Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) 0.52 36.0 3.30e-01 75.0% 61.9%
1vyfA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 43.0 3.63e-01 97.2% 88.1%
4l2iB00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.51 43.0 2.97e-01 94.4% 69.2%
2m7oA00 3.10.450.400 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Uncharacterised protein PF15513, DUF4651 0.50 36.0 3.63e-01 75.0% 80.0%
1xkiA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.50 41.0 3.53e-01 95.8% 62.5%
ECOD (37)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3976834 4.1.1.156 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2158 0.75 50.0 5.89e-01 94.4% 100.0%
4101502 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.72 52.0 5.88e-01 98.6% 100.0%
4461457 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 54.0 5.67e-01 98.6% 89.1%
4177200 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.71 51.0 5.78e-01 95.8% 98.2%
4625398 4.6.1.6 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC_RimM 0.71 60.0 5.94e-01 100.0% 88.0%
4547801 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 58.0 5.43e-01 91.7% 72.2%
4123576 4.6.1.6 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC_RimM 0.71 58.0 5.90e-01 100.0% 91.4%
3941391 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 51.0 5.59e-01 97.2% 93.3%
5029363 4.6.1.0 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.69 52.0 5.58e-01 98.6% 96.7%
4932609 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 54.0 5.64e-01 90.3% 93.8%
4086465 4.6.1.6 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC_RimM 0.68 56.0 5.66e-01 97.2% 92.9%
3888254 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 40.0 4.92e-01 73.6% 95.6%
4079197 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 54.0 5.09e-01 87.5% 72.9%
4430538 4.6.1.6 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC_RimM 0.67 57.0 5.72e-01 100.0% 90.7%
4087011 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 55.0 5.03e-01 91.7% 81.1%
4282868 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.65 55.0 5.56e-01 95.8% 94.3%
4941299 4.1.1.14 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.63 49.0 4.67e-01 97.2% 70.6%
3862201 5.1.4.480 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, eIF2A, ANAPC4_WD40, Beta-prop_NOL10_N 0.61 41.0 2.73e-01 70.8% 48.9%
3077669 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.61 41.0 4.34e-01 75.0% 77.3%
5067227 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 50.0 4.80e-01 94.4% 80.7%
3941004 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 47.0 4.57e-01 93.1% 92.5%
3220929 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 45.0 4.49e-01 90.3% 98.7%
3426132 220.1.1.153 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TRF2_HOY1 0.56 45.0 4.41e-01 93.1% 88.7%
1924009 227.1.1.10 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Herpes_PAP 0.55 39.0 3.21e-01 73.6% 94.7%
3416283 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.55 41.0 2.50e-01 79.2% 73.3%
5028024 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.55 40.0 3.33e-01 76.4% 70.8%
4932907 2005.1.1.10 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ETF 0.55 45.0 3.08e-01 91.7% 70.0%
1567587 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.53 36.0 3.64e-01 75.0% 70.4%
4994722 5.1.11.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed 0.53 43.0 2.78e-01 93.1% 98.6%
3348336 1.1.15.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like 0.52 39.0 2.67e-01 81.9% 65.4%
3939706 11.1.1.798 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_TPPC8_1st 0.52 38.0 2.96e-01 77.8% 76.5%
4120506 243.11.1.4 ↗ a+b two layers › Cystatin-like › NP_346341.1 protein › NP_346341.1 protein › PF29632 0.52 36.0 3.54e-01 87.5% 65.0%
3675857 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.52 41.0 3.21e-01 93.1% 43.8%
3418892 5.1.8.2 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › putative conserved lipoprotein NT01CX_1156 › DUF295 0.52 37.0 3.25e-01 77.8% 53.0%
3622643 4184.1.1.2 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.51 40.0 3.81e-01 86.1% 75.3%
1005445 243.11.1.1 ↗ a+b two layers › Cystatin-like › NP_346341.1 protein › NP_346341.1 protein › DUF4651 0.50 36.0 3.63e-01 75.0% 80.0%
3259128 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.50 39.0 3.34e-01 93.1% 50.4%