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NC_042133.1__YP_009625734.1__FDJ58_gp084__00084

Bact-Vir

NC_042133.1__YP_009625734.1__FDJ58_gp084__00084

Identity

Accession:
NC_042133 ↗
Kingdom:
phage

Quality

74.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Siophivirus› Bacillus_phage_SIOphi

TaxID: 1285382

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-53
PDB
Domain cluster: representative
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ytlA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.78 62.0 6.29e-01 100.0% 90.0%
3lx7A01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 54.0 5.70e-01 100.0% 89.1%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 57.0 5.18e-01 100.0% 63.8%
2do3A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.73 57.0 5.81e-01 100.0% 88.2%
2krsA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.73 63.0 6.01e-01 98.1% 100.0%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.73 59.0 6.10e-01 96.2% 100.0%
7u32F02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.72 63.0 6.37e-01 100.0% 98.0%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 63.0 5.78e-01 100.0% 80.0%
1vwxT01 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.72 64.0 5.20e-01 100.0% 61.9%
3h8zA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 54.0 5.64e-01 92.3% 87.5%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 63.0 5.80e-01 100.0% 88.2%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 57.0 5.62e-01 100.0% 82.1%
2jxbA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 62.0 5.31e-01 100.0% 62.8%
1ts9A00 2.30.30.210 Mainly Beta › Roll › SH3 type barrels. › Ribonuclease P/MRP, subunit p29 0.71 57.0 4.68e-01 100.0% 48.0%
2heqA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 62.0 6.14e-01 100.0% 98.1%
3kbgA03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.71 54.0 5.32e-01 100.0% 78.6%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.71 54.0 5.55e-01 100.0% 91.7%
3hfnA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.70 51.0 4.91e-01 100.0% 68.3%
1vq8Q00 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.70 61.0 5.07e-01 100.0% 60.0%
4iimA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 60.0 5.88e-01 100.0% 93.0%
3npfA02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 59.0 5.44e-01 100.0% 87.1%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.69 51.0 4.75e-01 100.0% 63.6%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 53.0 4.79e-01 100.0% 61.6%
2dl5A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 57.0 5.10e-01 100.0% 71.8%
2vb6A01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.67 53.0 5.28e-01 100.0% 85.2%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 53.0 4.93e-01 100.0% 69.1%
1fx7B03 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.65 53.0 4.76e-01 100.0% 82.5%
3go5A01 2.40.50.330 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.63 44.0 4.05e-01 75.0% 56.3%
1s1nA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 52.0 5.03e-01 100.0% 91.7%
3fcdB00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.62 40.0 3.05e-01 88.5% 28.6%
7d8gA01 2.40.380.10 Mainly Beta › Beta Barrel › FomD barrel-like fold › FomD-like 0.59 49.0 3.51e-01 96.2% 55.1%
5ajiB02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.59 45.0 4.59e-01 100.0% 88.0%
2kjzA01 3.30.720.120 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.59 38.0 3.80e-01 88.5% 63.0%
1t0hA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 46.0 3.92e-01 92.3% 65.6%
3k0xA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 48.0 3.91e-01 92.3% 78.8%
2hbpA00 2.30.30.700 Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 0.57 47.0 4.46e-01 100.0% 77.3%
5yrzB00 3.30.920.30 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. 0.55 42.0 4.08e-01 82.7% 74.1%
3oajA02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.55 40.0 2.97e-01 78.8% 90.3%
4qrlA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.55 41.0 3.41e-01 88.5% 47.3%
1vhkA01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.54 38.0 3.42e-01 73.1% 91.8%
1pfjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 43.0 3.58e-01 98.1% 65.7%
3lzhA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 41.0 3.53e-01 88.5% 94.5%
3h27A00 3.50.50.100 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › 0.53 40.0 2.41e-01 92.3% 10.5%
3d1cA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 43.0 3.51e-01 100.0% 96.5%
3havA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 42.0 3.62e-01 92.3% 89.9%
4bjzA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 41.0 3.02e-01 96.2% 57.1%
6ctzA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 38.0 3.33e-01 88.5% 91.4%
4c0fC00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.51 43.0 3.46e-01 100.0% 50.0%
4k7zA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 41.0 2.83e-01 98.1% 60.7%
6qkgA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 39.0 3.28e-01 98.1% 79.3%
3b0xA03 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.50 38.0 3.15e-01 86.5% 75.2%
3i6dA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 39.0 2.95e-01 96.2% 77.7%
ECOD (75)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3501560 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 68.0 5.68e-01 100.0% 68.9%
5000308 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.77 62.0 6.38e-01 100.0% 93.9%
4116921 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.77 55.0 5.28e-01 100.0% 66.7%
1793524 4.1.1.14 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.76 68.0 5.47e-01 100.0% 61.6%
2831853 4.1.1.14 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.76 67.0 4.72e-01 100.0% 38.4%
4862202 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.75 57.0 5.92e-01 98.1% 87.8%
4030603 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 67.0 6.13e-01 100.0% 77.9%
3216433 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.75 54.0 6.06e-01 92.3% 100.0%
5001589 4.1.1.14 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.75 65.0 5.29e-01 100.0% 57.0%
3486495 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 61.0 4.21e-01 96.2% 27.4%
137916 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.73 64.0 5.97e-01 100.0% 93.8%
5074039 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 65.0 5.75e-01 100.0% 76.0%
4937705 4.1.1.14 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.73 64.0 5.37e-01 100.0% 63.3%
5067227 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 64.0 5.52e-01 100.0% 68.7%
4520767 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.73 64.0 5.81e-01 100.0% 87.1%
3587555 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 64.0 5.80e-01 100.0% 85.7%
5005903 4.7.1.1 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.72 58.0 4.74e-01 100.0% 47.0%
1545880 4.1.1.278 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_YKFC_2nd 0.72 63.0 5.48e-01 100.0% 75.0%
3546607 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.72 55.0 5.59e-01 100.0% 88.0%
4981364 4.7.1.1 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.72 58.0 5.41e-01 100.0% 72.3%
4251253 4.7.1.1 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.71 58.0 4.68e-01 100.0% 45.7%
3840076 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.71 61.0 5.85e-01 98.1% 100.0%
4658938 4.1.1.96 ↗ beta barrels › SH3 › SH3 › SH3 › Hfq 0.71 53.0 4.43e-01 100.0% 46.7%
4956196 4.7.1.1 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.71 56.0 5.27e-01 98.1% 70.8%
4123180 4.1.1.96 ↗ beta barrels › SH3 › SH3 › SH3 › Hfq 0.71 53.0 4.70e-01 100.0% 56.0%
3933788 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 61.0 5.81e-01 100.0% 83.3%
5037772 4.7.1.1 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.70 57.0 4.50e-01 100.0% 42.5%
3519712 4.7.1.1 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.70 57.0 4.94e-01 98.1% 58.7%
3420348 4.1.1.306 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_VIII-1_N 0.70 53.0 5.27e-01 100.0% 80.0%
4068333 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.70 56.0 5.31e-01 100.0% 73.8%
4947175 4.7.1.0 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.70 57.0 4.79e-01 100.0% 53.3%
3934126 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 63.0 6.02e-01 100.0% 86.7%
4928381 4.7.1.1 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.70 57.0 5.13e-01 100.0% 65.8%
3741907 4.7.1.1 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.70 57.0 4.19e-01 100.0% 34.3%
4480519 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 55.0 5.28e-01 100.0% 76.7%
4368811 4.1.1.364 ↗ beta barrels › SH3 › SH3 › SH3 › GatD_N 0.70 52.0 5.17e-01 100.0% 78.2%
4101587 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.70 60.0 4.82e-01 100.0% 62.9%
3441976 4.7.1.1 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.69 57.0 4.24e-01 100.0% 36.3%
5064571 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 59.0 4.95e-01 98.1% 62.2%
4564484 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 53.0 5.56e-01 98.1% 97.8%
3953153 211.1.1.1 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.68 43.0 4.21e-01 86.5% 60.0%
2700914 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.68 55.0 4.78e-01 100.0% 58.7%
4932493 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 55.0 5.17e-01 100.0% 73.8%
5063004 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 56.0 5.28e-01 100.0% 92.3%
5008972 2005.1.1.17 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1f 0.67 53.0 3.04e-01 100.0% 9.2%
4279317 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.67 53.0 3.04e-01 100.0% 9.2%
3937333 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 57.0 4.94e-01 100.0% 62.5%
5005252 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 48.0 5.07e-01 100.0% 93.3%
5080336 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 52.0 4.96e-01 100.0% 73.4%
4573193 2005.1.1.17 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1f 0.65 51.0 3.15e-01 100.0% 14.0%
3926672 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 56.0 5.29e-01 100.0% 84.6%
5013683 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 47.0 4.54e-01 100.0% 70.0%
4137160 4.1.1.301 ↗ beta barrels › SH3 › SH3 › SH3 › MJ1316 0.64 50.0 4.47e-01 100.0% 58.7%
5060347 101.8.1.4 ↗ alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › tRNA-synt_1f 0.64 52.0 3.01e-01 100.0% 9.6%
5025204 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.63 53.0 4.58e-01 100.0% 75.6%
4968865 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 47.0 5.01e-01 100.0% 95.6%
4928438 4.6.1.0 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.63 48.0 4.67e-01 100.0% 75.9%
5022234 4.7.1.0 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.62 50.0 4.49e-01 100.0% 62.8%
4999741 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 48.0 4.22e-01 100.0% 57.5%
4032137 211.1.1.1 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.60 40.0 3.83e-01 90.4% 60.0%
3662319 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.58 49.0 4.34e-01 100.0% 71.2%
4197587 12.3.1.8 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_65N 0.57 43.0 2.86e-01 86.5% 79.6%
4034132 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.57 40.0 2.66e-01 90.4% 18.5%
3731058 206.1.1.20 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.56 43.0 2.87e-01 92.3% 58.1%
184277 206.1.1.11 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.55 44.0 2.80e-01 92.3% 27.1%
1565067 9.23.1.2 ↗ beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 › Lipocalin_8 0.55 42.0 3.32e-01 88.5% 52.9%
3784616 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.54 38.0 3.67e-01 88.5% 65.0%
3628042 243.4.1.0 ↗ a+b two layers › Cystatin-like › DsbC/DsbG N-terminal domain-like › DsbC/DsbG N-terminal domain-like 0.54 42.0 4.23e-01 94.2% 85.5%
3242245 719.1.1.0 ↗ beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain 0.54 43.0 4.02e-01 90.4% 95.4%
4497105 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.54 39.0 3.86e-01 90.4% 74.5%
284884 2003.1.2.8 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2,Pyr_redox_2 0.52 41.0 3.13e-01 98.1% 90.1%
4119657 3740.1.1.1 ↗ alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_N,FrhB_FdhB_C 0.52 44.0 2.81e-01 100.0% 88.9%
4950628 3740.1.1.4 ↗ alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.51 43.0 2.78e-01 100.0% 85.7%
4989981 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.51 40.0 2.89e-01 96.2% 60.5%
1005155 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.51 40.0 3.05e-01 98.1% 88.9%
D2 high residues 62-123
PDB
Domain cluster: representative
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3hr0B01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.80 63.0 5.86e-01 100.0% 68.4%
2yevC00 6.10.280.110 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.79 62.0 6.19e-01 95.2% 82.5%
1x04A00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.79 67.0 4.60e-01 91.9% 62.5%
4abmD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.78 66.0 6.14e-01 96.8% 75.3%
1yxrA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.76 56.0 5.25e-01 82.3% 64.9%
5lbmA00 1.20.58.1000 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer 0.76 64.0 5.86e-01 95.2% 72.3%
1b48A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.75 54.0 4.49e-01 87.1% 44.0%
3cazB00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.74 66.0 4.55e-01 100.0% 81.4%
1lvfB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.74 65.0 5.37e-01 95.2% 59.6%
2oauA01 1.10.287.1260 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.74 55.0 4.73e-01 82.3% 50.0%
1z72A00 1.20.910.10 Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like 0.74 56.0 3.83e-01 87.1% 23.6%
1j5wA02 1.20.58.180 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Class II aaRS and biotin synthetases; domain 2 0.74 55.0 5.20e-01 82.3% 67.5%
1yg2A02 6.10.140.190 Special › Helix non-globular › Helix Hairpins › 0.73 61.0 5.37e-01 95.2% 63.3%
3fppA03 6.10.140.1990 Special › Helix non-globular › Helix Hairpins › 0.72 63.0 5.67e-01 100.0% 71.6%
1jogA00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.72 59.0 4.62e-01 95.2% 42.2%
1zpyA00 6.10.140.1960 Special › Helix non-globular › Helix Hairpins › 0.72 53.0 4.69e-01 85.5% 53.8%
1x4tA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.71 52.0 5.40e-01 83.9% 84.5%
2gtvX00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.70 53.0 4.53e-01 83.9% 60.6%
3buxB01 1.20.930.20 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Adaptor protein Cbl, N-terminal domain 0.69 55.0 4.38e-01 88.7% 42.6%
5c8aA01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.69 46.0 4.35e-01 71.0% 59.0%
3qxzA02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.68 47.0 4.78e-01 72.6% 73.3%
1o7dC01 1.20.1270.50 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Glycoside hydrolase family 38, central domain 0.66 53.0 5.38e-01 88.7% 88.5%
1vh6A01 6.10.140.1940 Special › Helix non-globular › Helix Hairpins › 0.64 52.0 4.53e-01 90.3% 56.7%
1j1vA00 1.10.1750.10 Mainly Alpha › Orthogonal Bundle › Chromosomal Replication Initiator Protein Dnaa; Chain: A; › DnaA protein, C-terminal DNA-binding domain 0.64 44.0 3.81e-01 71.0% 50.0%
1ykhA00 6.10.140.200 Special › Helix non-globular › Helix Hairpins › 0.64 54.0 4.79e-01 100.0% 70.5%
5xfaA04 1.20.1440.230 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain 0.63 43.0 3.91e-01 71.0% 62.4%
4i2zA02 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.63 50.0 3.06e-01 85.5% 17.1%
1ailA00 1.10.287.10 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding 0.61 42.0 4.04e-01 74.2% 62.9%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4028927 150.1.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.95 69.0 5.61e-01 80.6% 44.8%
4107135 547.1.1.1 ↗ alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer 0.88 70.0 5.88e-01 85.5% 53.0%
4034092 150.5.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like 0.87 71.0 6.67e-01 100.0% 73.3%
3964486 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.82 72.0 5.32e-01 98.4% 83.7%
3192159 4207.1.2.0 ↗ alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › MED7 hinge region 0.80 73.0 5.96e-01 100.0% 58.2%
4523639 5086.1.1.92 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_AprE 0.80 71.0 5.00e-01 100.0% 91.6%
3735607 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.80 68.0 6.31e-01 100.0% 75.0%
3506288 4177.1.1.6 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR_3_WASP_bdg 0.79 69.0 4.73e-01 98.4% 81.8%
3978264 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.79 70.0 5.25e-01 100.0% 86.0%
4036645 5086.1.1.92 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_AprE 0.78 68.0 4.68e-01 95.2% 30.8%
3732397 3922.1.1.0 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.77 62.0 5.09e-01 100.0% 47.5%
3410594 4177.1.1.6 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR_3_WASP_bdg 0.77 67.0 4.69e-01 100.0% 30.7%
5043880 605.4.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein 0.76 58.0 5.23e-01 85.5% 60.0%
3725506 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.76 66.0 5.53e-01 100.0% 59.1%
3697800 3559.1.1.0 ↗ a+b complex topology › Mediator of RNA polymerase II transcription subunit 22 › Mediator of RNA polymerase II transcription subunit 22 › Mediator of RNA polymerase II transcription subunit 22 0.75 66.0 5.40e-01 100.0% 55.7%
3619061 5054.1.1.8 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 0.74 61.0 4.00e-01 90.3% 30.8%
3973695 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.73 64.0 4.58e-01 100.0% 38.4%
4602077 109.4.1.681 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans_2 0.73 56.0 3.39e-01 93.5% 12.2%
4006721 325.1.7.50 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › PF25876 0.72 64.0 5.76e-01 100.0% 74.1%
3973283 325.1.7.27 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › HH_AprE 0.72 62.0 4.42e-01 100.0% 57.9%
3386973 5086.1.1.84 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_MFP_RND 0.72 63.0 5.63e-01 100.0% 77.8%
3975665 5085.1.1.1 ↗ a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP 0.72 62.0 3.74e-01 100.0% 25.6%
4459223 605.1.1.162 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › COX4_pro 0.72 57.0 5.00e-01 98.4% 58.1%
4126680 109.4.1.681 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans_2 0.72 63.0 3.87e-01 100.0% 16.4%
3971758 5086.1.1.84 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_MFP_RND 0.71 63.0 5.67e-01 100.0% 74.1%
3973636 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.71 60.0 5.68e-01 95.2% 80.0%
3944501 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.70 59.0 5.55e-01 98.4% 76.2%
4258322 5086.1.1.189 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_CzcB 0.69 56.0 5.42e-01 88.7% 78.6%
3194364 109.4.1.681 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans_2 0.69 53.0 3.23e-01 85.5% 13.1%
3660913 3826.1.1.0 ↗ alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) 0.69 60.0 5.22e-01 93.5% 70.0%
5065366 601.1.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.65 51.0 4.07e-01 85.5% 43.3%