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NC_042133.1__YP_009625760.1__FDJ58_gp110__00110
Bact-VirNC_042133.1__YP_009625760.1__FDJ58_gp110__00110
Identity
- Accession:
- NC_042133 ↗
- Kingdom:
- phage
Quality
80.9
mean pLDDT
Taxonomy
TaxID: 1285382
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-103
Domain cluster:
rep: OQ921342.1__WIT26993.1__X__00006__D4-88
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4wksC02 | 2.30.120.10 | Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region | 0.56 | 29.0 | 3.32e-01 | 87.0% | 66.7% |
| 3lz8A01 | 2.60.260.20 | Mainly Beta › Sandwich › HSP40/DNAj peptide-binding domain › Urease metallochaperone UreE, N-terminal domain | 0.54 | 33.0 | 3.63e-01 | 80.0% | 74.4% |
| 2gnnB00 | 2.10.90.10 | Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines | 0.54 | 26.0 | 2.66e-01 | 87.0% | 45.3% |
| 1pfoA02 | 3.30.1040.20 | Alpha Beta › 2-Layer Sandwich › Carboxypeptidase Inhibitor; Chain A › | 0.53 | 23.0 | 2.91e-01 | 87.0% | 64.2% |
| 4x1jA00 | 2.10.90.10 | Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines | 0.53 | 26.0 | 2.87e-01 | 96.0% | 54.2% |
| 1ilvA00 | 3.40.1210.10 | Alpha Beta › 3-Layer(aba) Sandwich › Stationary-phase Survival Protein Sure Homolog; Chain: A, › Survival protein SurE-like phosphatase/nucleotidase | 0.52 | 30.0 | 2.31e-01 | 92.0% | 22.9% |
| 1kvzA00 | 3.10.130.10 | Alpha Beta › Roll › P-30 Protein › Ribonuclease A-like domain | 0.52 | 25.0 | 2.53e-01 | 74.0% | 42.1% |
| 2f7sA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 35.0 | 2.93e-01 | 71.0% | 65.4% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4061290 | 239.1.1.6 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C2 | 0.67 | 44.0 | 4.99e-01 | 96.0% | 90.4% |
| 3992240 | 10.35.1.2 ↗ | beta sandwiches › jelly-roll › ER-derived vesicles protein Erv41p lumenal domain › ER-derived vesicles protein Erv41p lumenal domain › COPIIcoated_ERV | 0.66 | 39.0 | 2.98e-01 | 97.0% | 26.4% |
| 3933410 | 10.35.1.2 ↗ | beta sandwiches › jelly-roll › ER-derived vesicles protein Erv41p lumenal domain › ER-derived vesicles protein Erv41p lumenal domain › COPIIcoated_ERV | 0.59 | 34.0 | 2.52e-01 | 95.0% | 20.4% |
| 3362248 | 632.3.1.20 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Phosphoprotein XD domain › Phosphoprotein XD domain › PF28698 | 0.55 | 27.0 | 3.52e-01 | 88.0% | 88.0% |
| 3684690 | 328.1.1.0 ↗ | a+b two layers › IF3-like › AlbA-like › AlbA-like | 0.55 | 31.0 | 3.26e-01 | 94.0% | 58.9% |
| 1569515 | 11.1.1.248 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › bMG6 | 0.55 | 36.0 | 3.81e-01 | 91.0% | 74.7% |
| 3902637 | 385.1.1.5 ↗ | few secondary structure elements › Cystine-knot cytokines › Cystine-knot cytokines › Cystine-knot cytokines › PDGF | 0.53 | 27.0 | 2.91e-01 | 87.0% | 54.1% |
| 5019455 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.52 | 37.0 | 3.09e-01 | 90.0% | 39.0% |
| 3285689 | 512.1.1.0 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) | 0.52 | 33.0 | 3.30e-01 | 92.0% | 62.0% |
| 4404320 | 239.1.1.5 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C | 0.51 | 39.0 | 4.14e-01 | 94.0% | 90.0% |
| 3910623 | 385.1.1.11 ↗ | few secondary structure elements › Cystine-knot cytokines › Cystine-knot cytokines › Cystine-knot cytokines › IL17 | 0.51 | 26.0 | 2.64e-01 | 92.0% | 42.9% |
| 3475469 | 239.1.1.5 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C | 0.51 | 40.0 | 3.87e-01 | 94.0% | 74.5% |
| 5074082 | 11.1.1.9 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N | 0.51 | 44.0 | 3.91e-01 | 96.0% | 73.8% |
| 3719288 | 10.35.1.1 ↗ | beta sandwiches › jelly-roll › ER-derived vesicles protein Erv41p lumenal domain › ER-derived vesicles protein Erv41p lumenal domain › COPIIcoated_ERV,ERGIC_N | 0.51 | 33.0 | 2.42e-01 | 95.0% | 22.0% |
| 3614700 | 10.35.1.1 ↗ | beta sandwiches › jelly-roll › ER-derived vesicles protein Erv41p lumenal domain › ER-derived vesicles protein Erv41p lumenal domain › COPIIcoated_ERV,ERGIC_N | 0.51 | 34.0 | 2.54e-01 | 96.0% | 25.0% |
| 4024591 | 239.1.1.5 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C | 0.50 | 41.0 | 4.12e-01 | 96.0% | 87.0% |
D2
medium
residues 104-157
Domain cluster:
representative