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NC_042139.2__YP_009626524.1__FDK28_gp12__00012
Bact-VirNC_042139.2__YP_009626524.1__FDK28_gp12__00012
Identity
- Accession:
- NC_042139 ↗
- Kingdom:
- phage
Quality
91.2
mean pLDDT
Taxonomy
TaxID: 2015851
Cluster
View cluster (5 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 12-104
Domain cluster:
rep: JN051154.1__AER59760.1__clP1_001__00001__D30-123
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1j2vA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.72 | 49.0 | 4.80e-01 | 90.3% | 64.4% |
| 1bdfA01 | 3.30.1360.10 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit | 0.69 | 49.0 | 4.72e-01 | 100.0% | 65.1% |
| 4mh4A02 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.68 | 53.0 | 5.35e-01 | 95.7% | 81.9% |
| 4fvmA02 | 3.30.70.2820 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.67 | 47.0 | 4.61e-01 | 93.5% | 67.0% |
| 6urtA02 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.66 | 48.0 | 4.99e-01 | 98.9% | 81.8% |
| 4ebjA01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.61 | 42.0 | 3.81e-01 | 96.8% | 51.6% |
| 3f6tA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.61 | 39.0 | 3.35e-01 | 93.5% | 39.9% |
| 4i99A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.60 | 51.0 | 3.43e-01 | 98.9% | 26.4% |
| 2zj2A03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 31.0 | 3.31e-01 | 92.5% | 56.0% |
| 3bguA01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 40.0 | 4.00e-01 | 100.0% | 68.8% |
| 5mu3B00 | 3.40.50.12050 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.58 | 45.0 | 3.78e-01 | 98.9% | 48.5% |
| 5b08A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 42.0 | 4.15e-01 | 98.9% | 73.0% |
| 3bb5A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 40.0 | 3.92e-01 | 98.9% | 67.0% |
| 4g7xB00 | 3.30.1150.10 | Alpha Beta › 2-Layer Sandwich › Fusion Protein Consisting Of Minor Coat Protein, Glycine Rich Linker, Tola, And A His Tag; Chain: A; Domain 2 › | 0.55 | 44.0 | 4.34e-01 | 100.0% | 78.4% |
| 4noiA01 | 3.30.1360.10 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit | 0.52 | 47.0 | 4.59e-01 | 100.0% | 90.3% |
| 3ue3A01 | 3.90.1310.10 | Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) | 0.52 | 37.0 | 3.72e-01 | 100.0% | 73.2% |
| 6kguA01 | 3.90.1310.10 | Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) | 0.52 | 36.0 | 3.72e-01 | 100.0% | 77.9% |
| 1e5tA01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.52 | 38.0 | 2.66e-01 | 80.6% | 91.6% |
| 1c0wA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 25.0 | 2.78e-01 | 84.9% | 56.2% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4022589 | 171.1.1.1 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 | 0.65 | 47.0 | 3.51e-01 | 75.3% | 87.1% |
| 4197190 | 812.1.1.1 ↗ | a+b duplicates or obligate multimers › MinE-like › Cell division protein MinE topological specificity domain › Cell division protein MinE topological specificity domain › MinE | 0.65 | 41.0 | 4.83e-01 | 89.2% | 98.3% |
| 3661686 | 304.114.1.2 ↗ | a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain › POL3_N | 0.65 | 52.0 | 5.02e-01 | 100.0% | 77.1% |
| 3728856 | 171.1.1.9 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3, Ribonucleas_3_3 | 0.63 | 45.0 | 3.45e-01 | 76.3% | 85.8% |
| 3313182 | 327.11.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) | 0.62 | 43.0 | 4.83e-01 | 87.1% | 97.1% |
| 3484070 | 304.114.1.0 ↗ | a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain | 0.62 | 50.0 | 4.88e-01 | 93.5% | 81.0% |
| 4954522 | 878.1.1.1 ↗ | a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 | 0.62 | 48.0 | 4.88e-01 | 100.0% | 85.1% |
| 3711494 | 4956.1.1.0 ↗ | a+b two layers › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit | 0.61 | 45.0 | 4.47e-01 | 90.3% | 75.8% |
| 3228957 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.61 | 48.0 | 4.83e-01 | 100.0% | 85.3% |
| 5052007 | 1075.1.1.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain | 0.60 | 41.0 | 2.91e-01 | 71.0% | 50.0% |
| 5026579 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.60 | 52.0 | 3.52e-01 | 98.9% | 25.9% |
| 3969252 | 324.1.1.1 ↗ | a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC | 0.60 | 52.0 | 4.61e-01 | 96.8% | 65.9% |
| 3794217 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.59 | 47.0 | 2.95e-01 | 92.5% | 15.5% |
| 3932594 | 304.114.1.2 ↗ | a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain › POL3_N | 0.58 | 48.0 | 4.73e-01 | 98.9% | 86.0% |
| 3997869 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.58 | 50.0 | 3.71e-01 | 100.0% | 37.8% |
| 3614118 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.58 | 50.0 | 3.07e-01 | 100.0% | 16.0% |
| 4322730 | 304.4.1.14 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Dabb | 0.58 | 43.0 | 4.13e-01 | 98.9% | 67.3% |
| 3264034 | 327.11.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) | 0.57 | 38.0 | 4.29e-01 | 89.2% | 98.5% |
| 2041765 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.57 | 48.0 | 3.85e-01 | 100.0% | 47.5% |
| 3800859 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.56 | 45.0 | 3.62e-01 | 92.5% | 42.0% |
| 3355857 | 4955.1.1.0 ↗ | a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit | 0.56 | 46.0 | 4.31e-01 | 98.9% | 70.8% |
| 3579169 | 304.114.1.2 ↗ | a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain › POL3_N | 0.56 | 45.0 | 4.46e-01 | 92.5% | 84.0% |
| 4858920 | 304.4.1.23 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Dyp_perox_C | 0.56 | 37.0 | 3.61e-01 | 82.8% | 61.4% |
| 3214818 | 304.114.1.0 ↗ | a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain | 0.56 | 46.0 | 3.12e-01 | 94.6% | 23.2% |
| 1680693 | 4034.1.1.1 ↗ | a+b complex topology › Sandwich domain in replication terminator protein (Tus) › Sandwich domain in replication terminator protein (Tus) › Sandwich domain in replication terminator protein (Tus) › Ter | 0.55 | 42.0 | 3.46e-01 | 80.6% | 98.8% |
| 3267419 | 601.51.1.7 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-helical domain in phase 1 flagellin › alpha-helical domain in phase 1 flagellin › DUF4460 | 0.55 | 37.0 | 3.10e-01 | 71.0% | 100.0% |
| 5004121 | 304.4.1.14 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Dabb | 0.54 | 40.0 | 3.95e-01 | 98.9% | 75.0% |
| 3819930 | 3364.1.1.2 ↗ | few secondary structure elements › Epidermal patterning factor-like protein 9 › Epidermal patterning factor-like protein 9 › Epidermal patterning factor-like protein 9 › EPF | 0.53 | 25.0 | 3.44e-01 | 77.4% | 100.0% |
| 3835200 | 3556.1.1.0 ↗ | a+b two layers › Uncharacterized Protein Rru_A0810 › Uncharacterized Protein Rru_A0810 › Uncharacterized Protein Rru_A0810 | 0.52 | 45.0 | 4.11e-01 | 98.9% | 70.0% |
| 4489926 | 323.1.1.12 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › TRI-like_N | 0.52 | 45.0 | 3.57e-01 | 98.9% | 72.0% |
| 5061358 | 304.55.1.14 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Y2_Tnp | 0.52 | 38.0 | 3.70e-01 | 84.9% | 68.2% |
| 3214822 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.52 | 42.0 | 2.93e-01 | 88.2% | 69.2% |
| 3558274 | 4096.1.1.1 ↗ | a+b two layers › NAP-like › NAP-like › NAP-like › NAP | 0.51 | 43.0 | 3.15e-01 | 100.0% | 75.0% |