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NC_042139.2__YP_009626527.1__FDK28_gp15__00015

Bact-Vir

NC_042139.2__YP_009626527.1__FDK28_gp15__00015

Identity

Accession:
NC_042139 ↗
Kingdom:
phage

Quality

84.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Poushouvirus› Corynebacterium_phage_Poushou

TaxID: 2015851

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 38-118
PDB
Domain cluster: rep: OR521085.1__WNO28323.1__SEA_PSONYX_13__00014__D69-149
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3fgxA00 3.30.2220.10 Alpha Beta › 2-Layer Sandwich › rbstp2171 › rbstp2171 0.64 55.0 5.24e-01 98.8% 82.3%
3mzkB03 1.20.58.940 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 37.0 4.04e-01 70.4% 75.7%
3r0vA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.56 47.0 3.39e-01 96.3% 62.6%
1h72C02 3.30.70.890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain 0.54 41.0 3.57e-01 84.0% 65.2%
6he0A01 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.52 37.0 3.49e-01 100.0% 57.9%
6lpfA01 1.10.730.20 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › 0.52 39.0 3.15e-01 80.2% 77.9%
1wkbA03 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.51 37.0 3.28e-01 77.8% 93.4%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4376893 2002.1.1.206 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DUF561 0.65 50.0 3.48e-01 82.7% 95.6%
D2 high residues 125-194
PDB
Domain cluster: rep: KU985096.1__AMW64376.1__PBI_KAZAN_28__00025__D6-74
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3hlzA02 1.20.120.1090 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.58 47.0 3.86e-01 88.6% 79.1%
3dteA02 1.10.10.1030 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › IrrE, HTH domain 0.56 29.0 3.55e-01 85.7% 82.9%
3tbiB02 6.10.140.1670 Special › Helix non-globular › Helix Hairpins › 0.56 40.0 3.65e-01 78.6% 63.0%
2p9xA00 1.10.1200.200 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Protein of unknown function DUF3227 0.54 46.0 4.19e-01 100.0% 81.6%
5fgzA02 1.10.3810.10 Mainly Alpha › Orthogonal Bundle › Penicillin binding protein transpeptidase fold › Biosynthetic peptidoglycan transglycosylase-like 0.53 38.0 2.97e-01 85.7% 32.5%
4bwcA02 1.10.439.20 Mainly Alpha › Orthogonal Bundle › Penicillin Amidohydrolase; domain 1 › Phospholipase B-like, domain 2 0.52 40.0 3.40e-01 82.9% 77.8%
2bvlA01 1.20.58.1190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 40.0 3.79e-01 84.3% 84.9%
1f68A00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.52 40.0 3.68e-01 90.0% 99.0%
3nbiA01 1.10.8.1020 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › RecQ-mediated genome instability protein 1, N-terminal domain 0.52 33.0 3.58e-01 95.7% 79.3%
4s3mB02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.51 44.0 3.89e-01 100.0% 88.7%
2krxA01 3.90.940.40 Alpha Beta › Alpha-Beta Complex › Eukaryotic RPB6 RNA polymerase subunit › Protein CHLORORESPIRATORY REDUCTION 7 0.51 36.0 3.59e-01 100.0% 76.4%
2d0iA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.50 37.0 2.87e-01 84.3% 97.9%
1aj5A00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.50 35.0 2.65e-01 72.9% 64.2%
6vw7B03 1.20.1440.230 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain 0.50 40.0 3.88e-01 92.9% 92.9%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4533839 132.1.1.1 ↗ alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding 0.59 46.0 4.09e-01 87.1% 81.0%
4540715 2004.1.1.641 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF6079 0.58 48.0 3.19e-01 100.0% 20.9%
5027329 186.1.1.0 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.57 34.0 3.41e-01 71.4% 54.7%
184869 6049.1.1.1 ↗ alpha bundles › PH0832-like › PH0832-like › PH0832-like › NitrOD5 0.54 46.0 4.19e-01 100.0% 81.6%
3930038 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.51 41.0 3.85e-01 92.9% 98.9%
4024467 3871.1.1.1 ↗ alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN 0.50 35.0 2.81e-01 71.4% 73.8%
D3 medium residues 208-266
PDB
Domain cluster: representative