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NC_042140.1__YP_009626744.1__FD732_gp150__00178

Bact-Vir

NC_042140.1__YP_009626744.1__FD732_gp150__00178

Identity

Accession:
NC_042140 ↗
Kingdom:
phage

Quality

92.3 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 16-98
PDB
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.67 51.0 5.52e-01 91.6% 100.0%
1r0mA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.65 48.0 4.16e-01 78.3% 93.1%
4ry2A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.62 50.0 4.23e-01 97.6% 51.8%
4bi3A01 3.90.1720.80 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.62 43.0 4.23e-01 96.4% 67.0%
2qdeA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.60 44.0 3.82e-01 78.3% 97.1%
1gsaA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.59 42.0 4.63e-01 96.4% 95.4%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.58 43.0 4.47e-01 89.2% 85.7%
2cm4A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 50.0 4.19e-01 96.4% 95.9%
3k8uA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.58 47.0 4.12e-01 97.6% 58.0%
2rrfA00 2.30.29.160 Mainly Beta › Roll › PH-domain like › Zinc finger FYVE domain-containing protein 21, C-terminal 0.57 44.0 3.72e-01 83.1% 72.3%
1srqA01 3.30.1120.160 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.57 43.0 3.68e-01 81.9% 79.0%
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.57 39.0 4.38e-01 89.2% 98.4%
4h75A00 2.80.10.70 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › Spindlin/Ssty 0.57 45.0 3.51e-01 90.4% 50.8%
3pubA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.57 44.0 3.60e-01 85.5% 100.0%
7szeB01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.56 42.0 3.90e-01 80.7% 96.3%
2hzmA02 2.20.140.20 Mainly Beta › Single Sheet › q64v53_bacfr protein fold › 0.56 41.0 4.15e-01 78.3% 97.6%
6j5cA02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.55 40.0 4.05e-01 80.7% 77.1%
5nqdA01 3.30.200.200 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › 0.53 41.0 3.26e-01 83.1% 87.2%
3kyfA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 39.0 3.62e-01 80.7% 93.9%
2x5cA01 3.30.70.3590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 40.0 4.00e-01 89.2% 78.0%
3dnhA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 39.0 3.31e-01 81.9% 85.4%
3oe3C00 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.52 36.0 3.61e-01 73.5% 100.0%
2wsuA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 43.0 3.71e-01 95.2% 96.4%
1m1jE01 3.90.215.10 Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 0.52 37.0 3.07e-01 77.1% 98.1%
3ghgB02 3.90.215.10 Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 0.52 43.0 3.14e-01 97.6% 80.2%
3mcaB01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.51 40.0 3.87e-01 95.2% 75.0%
5hn3A00 3.40.718.10 Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase 0.51 44.0 3.03e-01 100.0% 65.1%
1wjrA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 42.0 3.72e-01 94.0% 77.2%
1ykdB02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.51 41.0 3.23e-01 90.4% 63.6%
1iowA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.51 37.0 3.14e-01 79.5% 66.4%
6r3wA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 35.0 2.93e-01 73.5% 56.5%
3zpeA00 2.60.90.50 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › 0.50 41.0 3.44e-01 88.0% 84.1%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3721973 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.66 49.0 5.16e-01 90.4% 88.0%
3581696 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 39.0 4.78e-01 80.7% 100.0%
5077969 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 50.0 5.09e-01 89.2% 83.7%
4034320 4.1.1.398 beta barrels › SH3 › SH3 › SH3 › YolD 0.64 49.0 5.25e-01 91.6% 100.0%
3286662 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.64 50.0 4.67e-01 92.8% 69.0%
4069560 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 53.0 5.51e-01 95.2% 100.0%
4120629 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.63 50.0 5.20e-01 97.6% 94.7%
3580789 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.63 48.0 4.23e-01 80.7% 75.8%
4545520 4.7.1.7 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › WYL 0.62 49.0 4.95e-01 92.8% 84.7%
3953109 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.62 50.0 4.84e-01 94.0% 77.9%
2502914 4.31.1.0 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 0.62 52.0 4.49e-01 92.8% 65.4%
3191174 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.61 47.0 3.04e-01 83.1% 91.5%
3598658 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 49.0 3.92e-01 85.5% 91.1%
2866962 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.61 48.0 4.46e-01 92.8% 66.7%
3597224 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 49.0 4.25e-01 86.7% 80.8%
4162968 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.59 51.0 5.27e-01 96.4% 100.0%
3489188 4026.1.1.0 a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) 0.58 44.0 3.71e-01 81.9% 58.3%
4515863 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.58 47.0 4.31e-01 97.6% 68.2%
3576219 4.1.1.34 beta barrels › SH3 › SH3 › SH3 › MBT 0.57 41.0 3.49e-01 95.2% 44.1%
3273672 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.57 44.0 3.64e-01 84.3% 60.7%
1527468 4.1.1.51 beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.56 41.0 3.80e-01 90.4% 58.6%
3646521 4.2.1.4 beta barrels › SH3 › SAND › SAND › TDBD 0.55 39.0 4.11e-01 74.7% 93.3%
5062623 206.1.3.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.55 51.0 3.86e-01 100.0% 48.6%
3279607 9.3.1.0 beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like 0.55 42.0 4.00e-01 83.1% 100.0%
3834112 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.55 42.0 4.27e-01 84.3% 100.0%
3529047 633.23.1.4 alpha bundles › Bromodomain-like › Claudin › Claudin › Claudin_2 0.55 40.0 3.01e-01 79.5% 74.2%
3342814 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.55 47.0 4.51e-01 95.2% 89.5%
4002985 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 38.0 4.24e-01 85.5% 100.0%
3883159 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.54 42.0 4.14e-01 98.8% 77.8%
3938389 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.54 42.0 4.19e-01 98.8% 84.7%
3899537 4.1.1.56 beta barrels › SH3 › SH3 › SH3 › RBB1NT 0.54 43.0 3.94e-01 89.2% 73.0%
3893808 4.1.1.34 beta barrels › SH3 › SH3 › SH3 › MBT 0.53 45.0 3.03e-01 94.0% 65.3%
396031 4.22.1.1 beta barrels › SH3 › Hypothetical protein ORF131 › Hypothetical protein ORF131 › PSV_ORF131-like_dom 0.53 41.0 3.91e-01 89.2% 70.3%
4003103 4026.1.1.0 a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) 0.53 40.0 3.40e-01 83.1% 76.6%
4960081 223.1.1.14 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.52 33.0 3.10e-01 95.2% 52.0%
5051418 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.52 38.0 3.27e-01 77.1% 86.7%
3645395 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.51 40.0 4.07e-01 85.5% 98.8%
4935086 3504.3.1.1 beta barrels › MutM N-terminal domain-like › Fibrinogen binding protein N-terminal domain › Fibrinogen binding protein N-terminal domain › NFACT_N 0.51 37.0 3.05e-01 77.1% 75.5%
3218203 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.51 42.0 3.56e-01 96.4% 97.4%
4009943 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.51 40.0 3.59e-01 88.0% 67.2%
3721847 5.1.4.37 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup160 0.51 40.0 2.44e-01 85.5% 81.7%
3266788 4026.1.1.0 a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) 0.51 38.0 3.42e-01 83.1% 87.1%
4409502 1.1.5.26 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN 0.50 36.0 3.41e-01 78.3% 91.8%
3907175 719.1.1.3 beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › PAXX 0.50 35.0 3.33e-01 73.5% 72.0%
5018904 71.1.1.8 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_like 0.50 40.0 3.15e-01 90.4% 85.6%
3941411 223.1.1.3 a+b three layers › Profilin-like › sensor domains › sensor domains › GAF 0.50 41.0 3.30e-01 91.6% 70.6%
D2 high residues 103-155
PDB
Domain cluster: representative
CATH (85)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5ygbA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.86 78.0 6.73e-01 100.0% 72.5%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.83 75.0 7.12e-01 100.0% 87.1%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.81 70.0 6.23e-01 100.0% 68.5%
4ld6A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.81 72.0 5.55e-01 100.0% 56.4%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.81 69.0 6.44e-01 96.2% 76.9%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.80 70.0 6.80e-01 98.1% 89.8%
3askA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.79 72.0 6.80e-01 100.0% 93.5%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.78 66.0 6.01e-01 100.0% 71.0%
2budA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.78 67.0 5.67e-01 100.0% 68.5%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.77 69.0 6.82e-01 100.0% 92.9%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.77 66.0 6.17e-01 100.0% 77.3%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.77 66.0 6.18e-01 100.0% 78.1%
1wgsA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.77 68.0 5.04e-01 100.0% 43.6%
2e6nA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.77 66.0 5.26e-01 100.0% 49.0%
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 67.0 5.30e-01 100.0% 58.3%
1w4sA00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.75 66.0 4.81e-01 100.0% 52.7%
1khcA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 68.0 6.32e-01 100.0% 89.2%
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.74 65.0 5.88e-01 98.1% 74.6%
1m1gB03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.73 66.0 6.27e-01 100.0% 85.7%
2kr7A02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.73 47.0 4.61e-01 79.2% 61.4%
3exzB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.73 60.0 4.35e-01 92.5% 93.9%
4dt4A02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.73 47.0 4.61e-01 79.2% 61.4%
3ceyB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 65.0 4.71e-01 100.0% 41.1%
4p5nA00 2.30.30.1060 Mainly Beta › Roll › SH3 type barrels. › 0.72 64.0 5.74e-01 100.0% 90.5%
2ldmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 58.0 5.82e-01 98.1% 92.5%
2p4tA00 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.71 64.0 6.21e-01 100.0% 93.1%
2qi2A01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.69 59.0 4.81e-01 100.0% 56.7%
1h3zA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 61.0 4.83e-01 100.0% 59.3%
1fouA02 2.40.500.10 Mainly Beta › Beta Barrel › Upper collar protein gp10 (connector protein) fold › Upper collar protein gp10 (connector protein) 0.68 55.0 4.15e-01 92.5% 47.0%
3obyA01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.67 58.0 4.66e-01 100.0% 56.0%
3teeA02 2.30.30.760 Mainly Beta › Roll › SH3 type barrels. › 0.67 59.0 5.31e-01 98.1% 75.3%
2d7eA01 3.40.1440.60 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › PriA, 3(prime) DNA-binding domain 0.67 50.0 4.13e-01 100.0% 46.7%
1hpgA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.66 54.0 4.43e-01 90.6% 82.8%
1r4kA01 2.170.260.10 Mainly Beta › Beta Complex › paz domain › paz domain 0.66 58.0 4.37e-01 100.0% 85.6%
1uscA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.66 49.0 3.36e-01 79.2% 44.4%
1boqA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.66 53.0 4.25e-01 90.6% 85.0%
4zciA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.65 58.0 4.72e-01 100.0% 60.4%
4he6A00 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.65 58.0 4.88e-01 100.0% 66.3%
2w1zA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.65 53.0 4.07e-01 100.0% 75.2%
7cceA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.64 53.0 3.99e-01 100.0% 56.3%
1a15A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.64 45.0 4.17e-01 92.5% 58.2%
4h75A00 2.80.10.70 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › Spindlin/Ssty 0.63 51.0 3.58e-01 100.0% 31.2%
2e12A00 2.30.30.720 Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3247) 0.61 51.0 4.41e-01 100.0% 73.1%
4xtvB02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.61 46.0 4.72e-01 96.2% 93.8%
1cv8A00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.61 50.0 3.63e-01 100.0% 46.8%
4a53A01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.61 52.0 5.00e-01 100.0% 87.1%
1dgsA04 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 41.0 3.76e-01 71.7% 98.6%
2ej9A02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.60 49.0 5.03e-01 98.1% 100.0%
3q5zA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.60 49.0 3.92e-01 100.0% 71.1%
2hrvA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.59 47.0 4.00e-01 92.5% 86.3%
1njhA00 2.70.180.10 Mainly Beta › Distorted Sandwich › Protein Yojf; Chain: A; › Hypothetical protein YojF 0.59 48.0 4.00e-01 100.0% 82.4%
1f39A00 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.59 50.0 4.09e-01 100.0% 51.5%
4f7uG00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.58 48.0 4.56e-01 100.0% 95.6%
1vloA04 2.40.30.110 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains 0.57 47.0 4.02e-01 100.0% 56.0%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.56 48.0 4.22e-01 100.0% 73.5%
2hzrA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 47.0 3.41e-01 100.0% 64.0%
3na2A00 3.40.1570.20 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › 0.55 46.0 3.53e-01 100.0% 63.8%
3c6kA02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.55 42.0 4.17e-01 88.7% 89.3%
2k1gA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.55 48.0 3.63e-01 100.0% 43.4%
2piaA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.54 46.0 3.75e-01 100.0% 62.5%
1i0rA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 43.0 3.18e-01 96.2% 59.0%
2b2cA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.53 44.0 4.23e-01 96.2% 93.8%
1yoaA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 43.0 3.18e-01 96.2% 34.6%
6psyA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.53 42.0 2.81e-01 88.7% 38.3%
3bnkA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 41.0 3.06e-01 96.2% 51.1%
3fgeA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 42.0 3.10e-01 96.2% 57.0%
1gkaB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 42.0 3.14e-01 100.0% 62.1%
3mb5A01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.53 46.0 4.44e-01 100.0% 96.8%
4z85A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 43.0 3.00e-01 94.3% 28.9%
3e4vA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 43.0 3.15e-01 100.0% 36.2%
1iy9A02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.53 41.0 4.13e-01 90.6% 98.1%
2cmgA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.53 40.0 4.07e-01 86.8% 96.1%
2o07A01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.53 42.0 4.12e-01 94.3% 93.2%
2d5mA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 41.0 3.00e-01 96.2% 30.6%
8ct0B01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 40.0 2.98e-01 90.6% 73.5%
2ig6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 42.0 3.25e-01 100.0% 39.9%
2e5wA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.52 41.0 4.04e-01 90.6% 91.1%
1o54A01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.52 44.0 4.02e-01 100.0% 86.1%
3in6A02 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 41.0 3.31e-01 94.3% 45.3%
2i51B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 41.0 2.97e-01 100.0% 35.6%
2htdB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 40.0 3.24e-01 94.3% 85.5%
3o4fC01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.51 39.0 3.94e-01 88.7% 96.1%
1rz1A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 40.0 3.07e-01 96.2% 58.6%
3bpkA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 40.0 2.94e-01 96.2% 55.9%
2greF02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.50 44.0 3.89e-01 100.0% 73.1%
ECOD (99)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3447819 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.87 78.0 7.11e-01 100.0% 92.9%
3394215 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.86 78.0 6.25e-01 100.0% 58.0%
3549321 4.11.1.5 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24, PF31032 0.84 76.0 5.31e-01 100.0% 41.2%
3176265 4.11.1.1 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.84 77.0 5.35e-01 100.0% 43.2%
3826141 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.83 75.0 6.26e-01 100.0% 80.0%
3536595 2004.1.1.413 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Tudor_2 0.83 75.0 5.55e-01 100.0% 83.1%
3917372 4.1.1.101 beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.83 75.0 6.63e-01 100.0% 70.7%
5017073 4.11.1.0 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.83 75.0 5.31e-01 100.0% 37.3%
3500542 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.82 75.0 6.19e-01 100.0% 60.0%
3253266 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.82 73.0 5.82e-01 100.0% 64.8%
3691144 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.82 75.0 6.76e-01 100.0% 95.7%
3927214 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.82 75.0 5.62e-01 100.0% 49.2%
4049824 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.82 73.0 5.65e-01 100.0% 48.7%
3315471 4.8.1.10 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.82 75.0 6.28e-01 100.0% 65.9%
3768742 4.1.1.355 beta barrels › SH3 › SH3 › SH3 › WAC_Acf1_DNA_bd 0.82 74.0 4.64e-01 100.0% 23.1%
3723834 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.81 74.0 6.70e-01 100.0% 95.7%
3409299 4.1.1.43 beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.81 73.0 6.28e-01 100.0% 65.0%
3508415 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.81 70.0 5.15e-01 100.0% 38.5%
3488114 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.81 73.0 5.53e-01 100.0% 45.8%
3570369 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.81 73.0 6.06e-01 100.0% 62.2%
3585538 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.81 71.0 5.76e-01 100.0% 61.0%
3793962 4.8.1.10 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.81 71.0 5.95e-01 100.0% 67.8%
3490245 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.80 73.0 6.03e-01 100.0% 81.1%
3582876 4.8.1.10 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.80 70.0 5.62e-01 100.0% 58.1%
5037939 4.11.1.0 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.80 72.0 5.08e-01 100.0% 36.1%
4055256 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.80 70.0 5.79e-01 100.0% 56.7%
3491615 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.80 71.0 4.50e-01 100.0% 23.6%
3495447 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.80 70.0 5.40e-01 100.0% 49.2%
5032809 4.11.1.0 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.80 71.0 5.29e-01 100.0% 43.1%
2727964 4.1.1.105 beta barrels › SH3 › SH3 › SH3 › DUF5604 0.79 71.0 6.86e-01 100.0% 93.2%
3549474 4.1.1.406 beta barrels › SH3 › SH3 › SH3 › SH3-A_UBE2O 0.79 74.0 5.02e-01 100.0% 32.1%
4605602 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.79 69.0 6.47e-01 96.2% 80.0%
3702154 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.79 71.0 6.30e-01 100.0% 74.7%
4161673 4.1.1.105 beta barrels › SH3 › SH3 › SH3 › DUF5604 0.79 70.0 5.97e-01 100.0% 64.7%
3553413 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.79 70.0 5.95e-01 100.0% 68.2%
3568329 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.78 72.0 6.87e-01 100.0% 93.3%
3768116 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.78 69.0 4.57e-01 100.0% 27.0%
3507146 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.78 70.0 5.98e-01 100.0% 64.7%
4501723 4.8.1.45 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Peptidase_U57 0.78 71.0 7.03e-01 100.0% 98.2%
648 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.78 67.0 5.76e-01 100.0% 71.6%
4929262 4.11.1.2 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.78 69.0 4.93e-01 100.0% 41.3%
3392130 4.1.1.223 beta barrels › SH3 › SH3 › SH3 › KIF2A-like_1st 0.78 69.0 6.48e-01 100.0% 95.4%
4093836 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.77 71.0 6.79e-01 100.0% 91.7%
3586487 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.77 68.0 5.72e-01 100.0% 60.0%
647 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.77 68.0 5.04e-01 100.0% 43.6%
3741680 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.77 67.0 6.68e-01 98.1% 96.4%
3888349 4.1.1.12 beta barrels › SH3 › SH3 › SH3 › PWWP 0.77 70.0 5.13e-01 100.0% 42.3%
3226615 4.1.1.389 beta barrels › SH3 › SH3 › SH3 › PF30352 0.76 67.0 5.56e-01 100.0% 63.2%
3911348 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 69.0 5.07e-01 100.0% 42.3%
145843 4.1.1.12 beta barrels › SH3 › SH3 › SH3 › PWWP 0.76 67.0 5.30e-01 100.0% 58.3%
3570700 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.76 67.0 5.21e-01 100.0% 47.0%
4422252 4.1.1.455 beta barrels › SH3 › SH3 › SH3 › DSRB 0.76 67.0 6.44e-01 98.1% 100.0%
4027263 4.1.1.104 beta barrels › SH3 › SH3 › SH3 › KN17_SH3 0.76 69.0 5.20e-01 100.0% 45.8%
5051313 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 68.0 6.34e-01 100.0% 87.7%
3791777 4.1.1.18 beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.75 67.0 5.74e-01 100.0% 87.1%
3411714 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 67.0 6.08e-01 98.1% 74.3%
3660358 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 67.0 6.43e-01 100.0% 90.0%
4956443 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 68.0 6.50e-01 100.0% 91.7%
154312 4.1.1.65 beta barrels › SH3 › SH3 › SH3 › 53-BP1_Tudor 0.75 65.0 5.98e-01 100.0% 74.3%
3998386 4.1.1.18 beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.74 68.0 5.18e-01 100.0% 64.3%
3422227 4.1.1.20 beta barrels › SH3 › SH3 › SH3 › BAH 0.74 65.0 4.01e-01 100.0% 25.8%
3703449 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.74 62.0 5.59e-01 96.2% 92.0%
3238955 4.1.1.377 beta barrels › SH3 › SH3 › SH3 › MSL3_chromo-like 0.73 64.0 5.64e-01 100.0% 75.0%
3313137 4.1.1.20 beta barrels › SH3 › SH3 › SH3 › BAH 0.72 63.0 4.49e-01 100.0% 50.6%
4022153 4.1.1.225 beta barrels › SH3 › SH3 › SH3 › DUF7025 0.72 64.0 4.61e-01 100.0% 52.4%
3768347 4.1.1.230 beta barrels › SH3 › SH3 › SH3 › DUF7030 0.71 63.0 5.91e-01 100.0% 96.9%
3923766 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 61.0 4.81e-01 100.0% 73.9%
3256432 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 62.0 5.97e-01 100.0% 91.7%
3612351 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 61.0 5.47e-01 100.0% 94.7%
4020096 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.70 60.0 4.48e-01 100.0% 55.0%
4937158 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 56.0 5.43e-01 100.0% 80.0%
3769507 4.1.1.31 beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.69 62.0 5.61e-01 100.0% 77.1%
4945344 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 59.0 3.62e-01 100.0% 36.9%
3989019 1.1.7.19 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 0.67 60.0 4.73e-01 100.0% 55.5%
4034317 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 58.0 5.56e-01 100.0% 95.2%
4642857 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 56.0 5.04e-01 100.0% 91.3%
4423739 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.67 59.0 4.88e-01 100.0% 60.0%
5007084 1.1.7.28 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel 0.67 58.0 4.70e-01 100.0% 73.3%
3476907 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.66 53.0 3.30e-01 90.6% 30.9%
3758536 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 57.0 5.28e-01 100.0% 84.3%
3749245 4.1.1.31 beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.65 56.0 4.28e-01 100.0% 50.0%
5037173 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.65 59.0 4.80e-01 100.0% 66.3%
3845351 4.1.1.31 beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.65 55.0 4.72e-01 100.0% 72.2%
5079927 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.65 57.0 4.84e-01 100.0% 74.4%
4165709 1.1.7.19 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 0.64 57.0 4.57e-01 100.0% 58.1%
5062289 1.1.7.28 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel 0.64 56.0 4.68e-01 100.0% 74.7%
3907200 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.63 52.0 2.95e-01 96.2% 13.7%
3774692 4.1.1.31 beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.62 50.0 4.59e-01 100.0% 80.0%
4027502 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 50.0 4.80e-01 100.0% 89.2%
3625817 4.1.1.219 beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.62 53.0 4.67e-01 100.0% 73.8%
3913637 4.1.1.31 beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.60 49.0 4.33e-01 100.0% 67.8%
3801941 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.59 51.0 3.96e-01 100.0% 45.2%
2557227 4.7.1.2 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › ROF 0.58 49.0 4.46e-01 100.0% 76.6%
5032977 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 46.0 4.20e-01 100.0% 81.2%
4512371 1.1.5.10 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.55 41.0 3.09e-01 88.7% 75.0%
3229763 267.1.1.3 a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.54 43.0 2.82e-01 88.7% 37.1%
5013328 3699.1.1.1 beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.54 44.0 4.31e-01 96.2% 93.3%
4948135 1.1.5.10 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.53 42.0 3.03e-01 96.2% 29.5%
2841855 265.1.1.1 a+b two layers › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › Levi_coat 0.52 42.0 3.24e-01 100.0% 92.0%