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NC_042140.1__YP_009626802.1__FD732_gp092__00236
Bact-VirNC_042140.1__YP_009626802.1__FD732_gp092__00236
Identity
- Accession:
- NC_042140 ↗
- Kingdom:
- phage
Quality
62.1
mean pLDDT
Taxonomy
TaxID: 1755680
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 12-81
Domain cluster:
representative
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1jnrA03 | 1.20.58.100 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain | 0.77 | 53.0 | 4.40e-01 | 87.1% | 41.3% |
| 8h8jC01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.71 | 58.0 | 3.85e-01 | 88.6% | 29.5% |
| 1f2eA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.70 | 48.0 | 4.14e-01 | 71.4% | 50.9% |
| 3axjB02 | 1.20.58.200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 | 0.68 | 49.0 | 4.62e-01 | 87.1% | 62.4% |
| 3ztaA00 | 1.10.490.130 | Mainly Alpha › Orthogonal Bundle › Globin-like › | 0.67 | 50.0 | 4.00e-01 | 80.0% | 41.0% |
| 4e6hA00 | 1.25.40.1040 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.67 | 55.0 | 3.17e-01 | 87.1% | 24.4% |
| 3mkrA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.66 | 56.0 | 3.69e-01 | 92.9% | 91.8% |
| 2yfaA02 | 1.20.1440.210 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.64 | 50.0 | 4.27e-01 | 88.6% | 51.7% |
| 8alzB08 | 1.10.3380.10 | Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › Sec63 N-terminal domain-like domain | 0.63 | 44.0 | 3.57e-01 | 72.9% | 71.0% |
| 8b9zK01 | 1.10.287.3510 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.62 | 45.0 | 4.12e-01 | 78.6% | 58.2% |
| 2v6eA01 | 1.10.287.3180 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.62 | 43.0 | 4.20e-01 | 81.4% | 66.7% |
| 1wpaA01 | 6.10.140.340 | Special › Helix non-globular › Helix Hairpins › | 0.61 | 43.0 | 3.90e-01 | 75.7% | 78.8% |
| 3uarA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.59 | 38.0 | 3.28e-01 | 74.3% | 42.1% |
| 2zt5A02 | 3.30.40.230 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › | 0.53 | 36.0 | 3.42e-01 | 70.0% | 94.0% |
| 6xu2A01 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.52 | 41.0 | 2.41e-01 | 87.1% | 22.9% |
| 3lwjA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.51 | 40.0 | 2.98e-01 | 88.6% | 97.4% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3405911 | 4207.1.1.3 ↗ | alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › RNA polymerase II holoenzyme component SRB7 (MED21) › Med9 | 0.89 | 61.0 | 5.49e-01 | 75.7% | 54.4% |
| 3216584 | 632.1.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain | 0.87 | 58.0 | 5.12e-01 | 84.3% | 50.5% |
| 3634514 | 3403.1.1.6 ↗ | alpha bundles › Pre-mRNA-splicing factor PRP9 › Pre-mRNA-splicing factor PRP9 › Pre-mRNA-splicing factor PRP9 › SF3a60_bindingd,SF3A3 | 0.85 | 60.0 | 3.78e-01 | 80.0% | 16.5% |
| 3685859 | 3403.1.1.0 ↗ | alpha bundles › Pre-mRNA-splicing factor PRP9 › Pre-mRNA-splicing factor PRP9 › Pre-mRNA-splicing factor PRP9 | 0.85 | 60.0 | 3.63e-01 | 80.0% | 13.2% |
| 3456370 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.84 | 57.0 | 4.27e-01 | 74.3% | 31.6% |
| 3631342 | 3559.1.1.1 ↗ | a+b complex topology › Mediator of RNA polymerase II transcription subunit 22 › Mediator of RNA polymerase II transcription subunit 22 › Mediator of RNA polymerase II transcription subunit 22 › Med22 | 0.82 | 59.0 | 5.03e-01 | 80.0% | 49.5% |
| 3558280 | 603.1.1.114 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › HR1 | 0.79 | 57.0 | 5.04e-01 | 74.3% | 58.9% |
| 3977695 | 3711.1.1.1 ↗ | alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ | 0.79 | 48.0 | 3.91e-01 | 81.4% | 35.8% |
| 3790121 | 603.1.1.114 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › HR1 | 0.79 | 57.0 | 4.99e-01 | 75.7% | 56.0% |
| 3289802 | 284.1.1.0 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like | 0.73 | 68.0 | 3.95e-01 | 100.0% | 70.2% |
| 3593910 | 2006.1.4.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like | 0.72 | 48.0 | 3.49e-01 | 84.3% | 24.5% |
| 3441901 | 632.1.1.13 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › Rx_N | 0.71 | 47.0 | 4.55e-01 | 77.1% | 60.0% |
| 5048239 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.68 | 54.0 | 4.61e-01 | 90.0% | 53.0% |
| 3928838 | 103.4.1.0 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein | 0.66 | 44.0 | 4.20e-01 | 75.7% | 58.7% |
| 2983202 | 3843.1.1.1 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › Oxidored_q2 | 0.63 | 45.0 | 4.06e-01 | 78.6% | 55.2% |
| 3820220 | 109.4.1.585 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF627 | 0.63 | 49.0 | 3.65e-01 | 88.6% | 33.7% |
| 4952853 | 5058.1.1.2 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st | 0.59 | 44.0 | 3.98e-01 | 92.9% | 58.9% |
| 3943870 | 3711.1.1.1 ↗ | alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ | 0.58 | 45.0 | 3.90e-01 | 81.4% | 64.8% |
| 3601265 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.53 | 39.0 | 2.78e-01 | 80.0% | 64.3% |
| 3643105 | 6026.1.1.1 ↗ | alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain › cwf21 | 0.53 | 46.0 | 3.62e-01 | 100.0% | 52.9% |