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NC_042315.1__YP_009636153.1__FGG57_gp089__00089

Bact-Vir

NC_042315.1__YP_009636153.1__FGG57_gp089__00089

Identity

Accession:
NC_042315 ↗
Kingdom:
phage

Quality

94.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 14-66
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF23889.2 best DUF7241 93.5 9.40e-27 100.0% 77.1%
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4f88102 3.90.1720.60 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.73 65.0 4.29e-01 100.0% 29.6%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.73 63.0 5.92e-01 100.0% 83.6%
3fb9B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.73 64.0 5.52e-01 100.0% 70.2%
6bhdA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 60.0 5.66e-01 98.1% 76.2%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 60.0 5.41e-01 100.0% 65.8%
4dq2A03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.72 55.0 5.79e-01 100.0% 97.9%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 57.0 5.26e-01 100.0% 68.1%
2rm4A01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.71 60.0 5.69e-01 100.0% 89.4%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.69 56.0 5.66e-01 98.1% 90.4%
4zgnB00 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.68 55.0 4.41e-01 100.0% 45.6%
2e6zA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.68 56.0 5.49e-01 100.0% 84.7%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 59.0 5.71e-01 98.1% 96.6%
1x6bA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 59.0 5.59e-01 100.0% 90.6%
2ckkA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.67 59.0 5.78e-01 100.0% 94.7%
3nrlA00 2.40.10.390 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.67 47.0 4.38e-01 98.1% 58.8%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 58.0 4.84e-01 100.0% 81.2%
2cztA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.67 57.0 4.17e-01 100.0% 71.6%
1y71A00 2.30.30.430 Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain 0.67 59.0 4.68e-01 100.0% 55.0%
2l5pA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.67 57.0 4.01e-01 100.0% 64.6%
4n4iA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 53.0 4.53e-01 100.0% 54.4%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.65 50.0 5.21e-01 98.1% 95.8%
2kgtA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 54.0 4.99e-01 98.1% 87.5%
8t5tA01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.64 56.0 3.86e-01 100.0% 77.3%
1w1hD00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 52.0 4.00e-01 100.0% 50.4%
3holA02 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.62 53.0 3.80e-01 100.0% 89.8%
3bbjA00 2.40.160.210 Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain 0.61 43.0 2.83e-01 77.4% 33.7%
2yzyA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.60 51.0 3.70e-01 100.0% 74.8%
3el6A00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.60 44.0 2.87e-01 81.1% 31.7%
3n8bA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 41.0 3.71e-01 71.7% 58.7%
6e5bN00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.60 43.0 2.95e-01 79.2% 97.5%
2gu3A01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 43.0 4.12e-01 81.1% 67.7%
4mveA00 2.40.128.580 Mainly Beta › Beta Barrel › Lipocalin › GXWXG domain 0.58 43.0 3.27e-01 84.9% 78.2%
3askA02 2.30.30.1150 Mainly Beta › Roll › SH3 type barrels. › 0.58 47.0 3.60e-01 100.0% 41.7%
2gu3A02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 43.0 4.11e-01 83.0% 69.8%
4gq1A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 49.0 3.02e-01 100.0% 89.9%
1lshB00 2.20.90.10 Mainly Beta › Single Sheet › Lipovitellin-phosvitin complex; beta-sheet shell regions › Vitellinogen, beta-sheet shell domain 0.57 41.0 2.95e-01 79.2% 29.9%
1wi1A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 47.0 3.85e-01 100.0% 85.6%
4hz9B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 41.0 3.29e-01 84.9% 88.6%
2hbpA00 2.30.30.700 Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 0.56 44.0 4.23e-01 98.1% 77.3%
2kr0A01 2.30.29.70 Mainly Beta › Roll › PH-domain like › Proteasomal ubiquitin receptor Rpn13/ADRM1 0.56 46.0 3.74e-01 100.0% 87.6%
3djwA00 3.30.160.300 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 41.0 3.47e-01 83.0% 53.7%
2qe8A00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.54 43.0 2.71e-01 92.5% 24.6%
2h36X00 3.30.160.300 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 40.0 3.27e-01 83.0% 46.3%
3mx7A00 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.53 45.0 3.91e-01 100.0% 94.4%
8aimG01 3.10.450.20 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor 0.53 40.0 3.62e-01 88.7% 72.8%
3nqzA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 38.0 3.43e-01 86.8% 54.8%
6j8yC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.51 42.0 2.80e-01 98.1% 94.1%
1jrrA01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.51 38.0 3.05e-01 84.9% 67.2%
ECOD (77)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3300074 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.79 66.0 6.56e-01 100.0% 90.7%
4191690 4.1.1.98 beta barrels › SH3 › SH3 › SH3 › ProQ_C 0.76 60.0 5.84e-01 98.1% 77.6%
4084190 4.1.1.98 beta barrels › SH3 › SH3 › SH3 › ProQ_C 0.76 59.0 5.74e-01 98.1% 76.3%
4422251 4.1.1.98 beta barrels › SH3 › SH3 › SH3 › ProQ_C 0.75 58.0 5.98e-01 96.2% 88.0%
5022491 4.1.1.182 beta barrels › SH3 › SH3 › SH3 › DUF2097 0.74 65.0 5.57e-01 100.0% 64.7%
3387378 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.74 64.0 5.54e-01 100.0% 71.8%
4948927 71.1.1.0 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.74 65.0 4.33e-01 100.0% 80.0%
4321173 4.1.1.98 beta barrels › SH3 › SH3 › SH3 › ProQ_C 0.74 58.0 5.69e-01 100.0% 79.3%
3854862 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.74 60.0 4.90e-01 100.0% 49.5%
490 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.73 63.0 5.73e-01 100.0% 75.7%
3914746 4.1.1.128 beta barrels › SH3 › SH3 › SH3 › Tudor_4 0.73 59.0 5.43e-01 98.1% 68.6%
3617111 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.73 58.0 4.90e-01 100.0% 52.2%
3510526 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 62.0 6.21e-01 100.0% 92.7%
3199259 4.1.1.286 beta barrels › SH3 › SH3 › SH3 › DUF7072 0.73 60.0 5.62e-01 98.1% 75.4%
4317167 4.1.1.52 beta barrels › SH3 › SH3 › SH3 › ZapC_C 0.72 63.0 5.52e-01 100.0% 75.0%
3695663 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.72 62.0 4.42e-01 100.0% 63.8%
3230083 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.72 58.0 4.88e-01 100.0% 52.2%
2167708 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 60.0 5.73e-01 100.0% 84.6%
3300226 4.1.1.140 beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.71 63.0 5.48e-01 100.0% 92.5%
3507003 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 62.0 5.60e-01 100.0% 89.3%
4075769 4.1.1.154 beta barrels › SH3 › SH3 › SH3 › DUF4772 0.71 57.0 5.69e-01 98.1% 87.3%
4680746 4.1.1.52 beta barrels › SH3 › SH3 › SH3 › ZapC_C 0.70 60.0 5.41e-01 98.1% 76.0%
4021296 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.70 62.0 4.34e-01 100.0% 55.5%
4951146 71.1.1.8 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_like 0.70 60.0 4.05e-01 100.0% 78.1%
4974463 1.1.17.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.70 55.0 3.93e-01 88.7% 42.3%
3586953 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 59.0 5.63e-01 100.0% 87.7%
3451171 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 61.0 5.72e-01 100.0% 80.0%
4029082 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 53.0 5.47e-01 100.0% 90.0%
5039728 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.69 55.0 3.56e-01 88.7% 41.2%
3217772 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 60.0 5.19e-01 100.0% 87.1%
3922679 4.1.1.154 beta barrels › SH3 › SH3 › SH3 › DUF4772 0.69 55.0 5.64e-01 96.2% 94.0%
3764432 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 55.0 5.22e-01 100.0% 73.8%
3485965 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 55.0 5.37e-01 100.0% 81.7%
4949848 4.1.1.364 beta barrels › SH3 › SH3 › SH3 › GatD_N 0.68 53.0 5.27e-01 100.0% 83.6%
3795384 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 57.0 3.84e-01 100.0% 23.7%
4078260 4.1.1.52 beta barrels › SH3 › SH3 › SH3 › ZapC_C 0.68 57.0 4.91e-01 100.0% 66.7%
3576940 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 57.0 3.76e-01 100.0% 22.7%
4060488 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.67 52.0 4.61e-01 100.0% 57.5%
552 4.1.1.61 beta barrels › SH3 › SH3 › SH3 › KapB 0.67 59.0 4.68e-01 100.0% 55.0%
3231154 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 58.0 5.08e-01 100.0% 93.8%
5011920 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 55.0 4.95e-01 100.0% 96.2%
3948255 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 57.0 4.33e-01 100.0% 54.6%
4668791 1.1.8.4 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C 0.65 52.0 4.20e-01 100.0% 44.8%
None 0.65 53.0 3.48e-01 88.7% 34.7%
5023947 1.1.17.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.65 52.0 3.67e-01 88.7% 41.2%
4147290 4.1.1.364 beta barrels › SH3 › SH3 › SH3 › GatD_N 0.64 50.0 4.71e-01 100.0% 70.8%
4079197 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 54.0 4.75e-01 100.0% 62.4%
3968432 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.62 48.0 3.97e-01 88.7% 77.1%
5021635 219.1.1.51 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39_2 0.61 48.0 3.70e-01 100.0% 90.9%
3280401 243.3.1.3 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.60 45.0 4.28e-01 83.0% 69.2%
3194888 4026.1.1.0 a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) 0.60 51.0 3.72e-01 100.0% 43.1%
3926624 4184.1.1.0 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.60 46.0 4.67e-01 100.0% 94.0%
3436557 220.4.1.8 beta barrels › PH domain-like › second barrel domain in viral glycoproteins › second barrel domain in viral glycoproteins › ZGRF1-like_N 0.60 50.0 4.53e-01 98.1% 100.0%
3957726 222.1.1.12 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PS-DH 0.59 44.0 3.10e-01 81.1% 55.6%
3231705 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 48.0 4.03e-01 100.0% 81.0%
5004050 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 45.0 4.24e-01 96.2% 70.0%
3587129 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.59 43.0 4.08e-01 83.0% 66.2%
1100 10.1.1.32 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Sial-lect-inser 0.58 49.0 3.40e-01 100.0% 61.9%
5028935 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.58 42.0 3.93e-01 81.1% 61.4%
4653627 4252.1.1.3 beta barrels › AttH-like › AttH-like › AttH-like › DA_C 0.58 48.0 3.52e-01 100.0% 90.9%
6422 243.3.1.3 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.58 43.0 4.11e-01 83.0% 69.8%
3323488 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.57 49.0 3.08e-01 98.1% 69.3%
3621272 708.1.1.16 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › RYYR-CCHC 0.57 47.0 3.63e-01 98.1% 64.4%
4026653 220.1.1.11 beta barrels › PH domain-like › PH domain-like › PH domain-like › Rpn13_ADRM1_Pru 0.57 47.0 3.87e-01 100.0% 89.1%
3622645 4184.1.1.2 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.57 44.0 3.77e-01 100.0% 50.5%
3743614 4.1.1.28 beta barrels › SH3 › SH3 › SH3 › BPL_C 0.56 43.0 4.25e-01 98.1% 88.3%
5015593 3111.1.1.0 beta barrels › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain 0.56 46.0 3.69e-01 100.0% 80.0%
4545659 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.54 41.0 3.76e-01 86.8% 61.3%
2549177 5.1.2.14 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Phage_RBD_prop 0.54 44.0 2.86e-01 100.0% 72.1%
5043543 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.53 44.0 2.85e-01 96.2% 25.6%
5002129 10.1.1.126 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › DUF7308 0.53 43.0 3.09e-01 100.0% 55.8%
3167783 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 40.0 2.46e-01 92.5% 18.6%
4366777 5.1.5.205 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PF27482 0.52 42.0 2.68e-01 100.0% 71.2%
4961699 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.52 42.0 3.07e-01 100.0% 82.7%
3831169 5.1.5.66 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › FBA_1 0.52 41.0 2.75e-01 98.1% 24.4%
3950458 1.1.17.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.51 41.0 2.98e-01 100.0% 93.3%
4970135 1.1.7.83 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › YknX_C 0.50 38.0 3.37e-01 90.6% 54.1%