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NC_042331.1__YP_009637958.1__FGG33_gp42__00054

Bact-Vir

NC_042331.1__YP_009637958.1__FGG33_gp42__00054

Identity

Accession:
NC_042331 ↗
Kingdom:
phage

Quality

82.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 18-86
PDB
CATH (56)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2kvtA00 3.30.730.30 Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › YaiA protein 0.75 53.0 5.32e-01 73.9% 80.3%
2ffgA00 3.30.720.20 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 0.73 62.0 5.91e-01 94.2% 98.8%
2fjlA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.72 49.0 3.82e-01 71.0% 34.7%
5o7oC01 3.30.310.280 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.70 40.0 3.20e-01 100.0% 31.2%
2ra8A01 2.20.140.10 Mainly Beta › Single Sheet › q64v53_bacfr protein fold › WGR domain 0.66 53.0 5.19e-01 85.5% 86.5%
1p49A03 3.30.1120.10 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.65 46.0 3.96e-01 73.9% 64.8%
1txdA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 44.0 3.72e-01 72.5% 43.8%
2w9jA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.64 44.0 4.45e-01 76.8% 71.8%
3hrgA02 3.30.420.260 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Protein of unknown function DUF3822, C-terminal domain 0.64 44.0 3.79e-01 75.4% 44.7%
4g6tA00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.62 52.0 4.35e-01 97.1% 84.4%
1x49A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.62 45.0 4.53e-01 97.1% 75.7%
4jonC00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.62 49.0 4.13e-01 87.0% 65.3%
2fkiA00 3.90.1150.30 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.61 54.0 4.57e-01 100.0% 82.2%
2k2jA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 43.0 3.72e-01 75.4% 46.2%
1ekgA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.61 51.0 4.31e-01 95.7% 73.1%
3iwgA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.60 44.0 3.50e-01 76.8% 68.1%
5gm0A02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.60 50.0 4.15e-01 95.7% 76.9%
3d2mA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.60 44.0 3.37e-01 76.8% 62.0%
5nldB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.60 51.0 4.14e-01 98.6% 75.4%
2jj6A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.59 51.0 4.18e-01 98.6% 81.3%
2fe0A01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.59 46.0 4.07e-01 87.0% 86.9%
2p12A01 2.40.380.10 Mainly Beta › Beta Barrel › FomD barrel-like fold › FomD-like 0.59 42.0 3.29e-01 76.8% 42.9%
6wqbA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.59 42.0 3.29e-01 75.4% 64.2%
4bumX00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.59 40.0 2.68e-01 71.0% 20.5%
1wv8A00 3.30.2390.10 Alpha Beta › 2-Layer Sandwich › TTHA1013/TTHA0281-like › TTHA1013-like 0.58 44.0 4.41e-01 82.6% 80.3%
3zxfA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.58 49.0 4.04e-01 97.1% 77.8%
4ym3C00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.58 50.0 4.05e-01 98.6% 75.0%
5chtB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.58 47.0 3.07e-01 88.4% 44.0%
5gm0A01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 48.0 3.89e-01 98.6% 71.6%
2x1cB01 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.57 51.0 3.38e-01 100.0% 56.4%
3b8bA01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.57 43.0 3.28e-01 81.2% 44.0%
3d22A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.56 47.0 3.92e-01 95.7% 89.1%
3fssA01 2.30.29.120 Mainly Beta › Roll › PH-domain like › 0.56 44.0 3.59e-01 87.0% 66.2%
4amwA01 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.56 46.0 3.07e-01 95.7% 59.1%
5t5lA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 47.0 3.36e-01 98.6% 86.5%
3vwcA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.55 39.0 3.06e-01 73.9% 67.1%
1omoA01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.55 45.0 3.60e-01 94.2% 63.1%
2wweA01 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.55 47.0 4.20e-01 100.0% 80.8%
3hlzB01 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.54 42.0 3.46e-01 88.4% 45.7%
2db2A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 46.0 4.23e-01 100.0% 87.2%
3hbcA00 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.54 45.0 2.93e-01 92.8% 94.2%
2mdrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 45.0 4.15e-01 100.0% 75.5%
3iwgA01 3.40.630.80 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › 0.53 38.0 3.15e-01 76.8% 71.5%
1pguA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 44.0 3.05e-01 100.0% 47.0%
2y23A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 37.0 3.32e-01 75.4% 75.0%
5ov3B01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 44.0 2.96e-01 97.1% 91.4%
3s6gA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 39.0 3.10e-01 81.2% 58.9%
1oo0A00 3.30.1560.10 Alpha Beta › 2-Layer Sandwich › Mago nashi protein › Mago nashi 0.52 39.0 3.20e-01 84.1% 98.6%
2z13A00 2.30.29.170 Mainly Beta › Roll › PH-domain like › 0.51 38.0 3.27e-01 81.2% 73.5%
5cflA02 3.40.50.12100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Stimulator of interferon genes protein 0.51 46.0 3.58e-01 100.0% 70.1%
4emtA02 3.40.50.12100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Stimulator of interferon genes protein 0.51 46.0 3.66e-01 100.0% 67.2%
1qnaA01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.50 44.0 4.05e-01 100.0% 98.9%
2d4oA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.50 40.0 3.25e-01 85.5% 83.7%
4fdtB00 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.50 43.0 2.65e-01 92.8% 93.7%
1aisA02 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.50 41.0 3.79e-01 88.4% 88.5%
4aghA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.50 40.0 3.90e-01 92.8% 95.0%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4955671 7089.1.1.0 a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.75 63.0 6.01e-01 91.3% 95.0%
6667 4221.1.1.1 a+b two layers › YkuJ-like › YkuJ-like › YkuJ-like › DUF1797 0.74 60.0 5.83e-01 89.9% 98.7%
4889666 11.2.1.117 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PI-PLC-Y 0.72 51.0 4.25e-01 73.9% 44.9%
3922015 220.1.1.36 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_12 0.71 51.0 4.08e-01 75.4% 46.7%
3226500 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.68 55.0 3.71e-01 89.9% 24.9%
3947081 4210.1.1.0 a+b two layers › WGR domain › WGR domain › WGR domain 0.68 54.0 5.58e-01 85.5% 95.3%
4029235 298.1.1.0 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 0.67 48.0 3.48e-01 75.4% 68.4%
3769852 7515.1.1.4 a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Sulfatase,Sulfatase_C 0.67 50.0 2.95e-01 81.2% 77.2%
3994593 330.1.1.8 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Dicer_dsRBD 0.66 50.0 4.75e-01 100.0% 68.8%
3533614 7515.1.1.4 a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Sulfatase,Sulfatase_C 0.65 49.0 2.91e-01 81.2% 79.4%
4057882 241.2.1.1 a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.64 56.0 5.01e-01 100.0% 80.0%
5046191 4018.1.1.2 a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P 0.64 46.0 3.48e-01 75.4% 38.7%
3591979 77.2.1.1 beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.64 47.0 3.67e-01 79.7% 41.3%
4525958 241.2.1.1 a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.64 56.0 4.84e-01 100.0% 76.9%
1144832 2484.1.1.63 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF3822 0.63 44.0 3.95e-01 75.4% 51.0%
3884904 7515.1.1.2 a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Sulfatase 0.63 48.0 3.07e-01 81.2% 43.0%
3379168 5.1.10.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.63 47.0 4.87e-01 81.2% 90.5%
4946272 4018.1.1.2 a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P 0.62 44.0 3.41e-01 75.4% 38.1%
3230371 3180.1.1.0 a+b two layers › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related 0.62 49.0 4.31e-01 89.9% 61.8%
3520914 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.62 53.0 2.97e-01 97.1% 17.5%
3585860 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.62 53.0 4.12e-01 95.7% 73.3%
4943586 243.6.1.12 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › PUA 0.62 41.0 3.97e-01 97.1% 60.0%
3596980 844.1.1.0 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain 0.62 49.0 3.52e-01 87.0% 66.3%
5021016 243.6.1.0 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.62 42.0 3.76e-01 97.1% 51.6%
3179799 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.61 46.0 2.78e-01 79.7% 26.6%
3917456 5.1.5.93 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_EMC1_N 0.61 46.0 2.86e-01 82.6% 30.8%
3712208 2484.8.1.0 mixed a+b and a/b › Ribonuclease H-like › Separase pseudo-protease domain (PPD) › Separase pseudo-protease domain (PPD) 0.61 44.0 2.93e-01 76.8% 78.2%
3494929 73.1.1.1 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA 0.60 51.0 4.47e-01 94.2% 78.1%
3260943 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 46.0 4.67e-01 84.1% 90.0%
4927832 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.60 47.0 4.09e-01 87.0% 85.5%
5002677 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.60 49.0 3.97e-01 95.7% 75.2%
3509392 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.59 51.0 3.96e-01 98.6% 63.7%
4928574 241.11.1.0 a+b two layers › Type III secretory system chaperone-like › YjbR-like › YjbR-like 0.59 51.0 4.72e-01 98.6% 78.4%
3573635 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.58 48.0 3.75e-01 94.2% 73.1%
5002093 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.58 47.0 3.82e-01 95.7% 75.3%
3519451 10.1.1.4 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.58 51.0 4.04e-01 100.0% 75.2%
1373 10.15.1.1 beta sandwiches › jelly-roll › Smp-1-like › Smp-1-like › DUF1935 0.58 47.0 3.90e-01 92.8% 84.7%
1555767 10.1.1.4 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.58 49.0 3.99e-01 98.6% 73.8%
4958290 2003.1.1.22 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › GFO_IDH_MocA 0.58 39.0 2.56e-01 71.0% 38.7%
3597540 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.57 47.0 3.01e-01 91.3% 27.7%
4106356 6.1.1.0 beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil 0.56 41.0 3.39e-01 78.3% 93.1%
3501861 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.56 48.0 4.24e-01 100.0% 65.7%
4631877 5.1.4.219 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DPPIV_N 0.55 47.0 2.85e-01 98.6% 73.4%
3494433 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.54 46.0 3.92e-01 100.0% 75.0%
4423214 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.54 45.0 4.07e-01 100.0% 70.5%
3392668 252.2.1.0 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.54 42.0 4.28e-01 91.3% 95.4%
3916473 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.54 43.0 3.90e-01 91.3% 79.0%
3547439 4059.1.1.1 a+b complex topology › Serpins › Serpins › Serpins › Serpin 0.53 35.0 2.40e-01 75.4% 17.7%
3917645 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 40.0 3.44e-01 87.0% 70.8%
3278123 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.52 38.0 3.13e-01 79.7% 71.9%
4958164 298.1.1.42 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA 0.52 46.0 2.96e-01 97.1% 76.4%
3212280 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 43.0 2.73e-01 95.7% 38.0%
3433521 4205.1.1.0 a+b two layers › SMI1/KNR4-like › SMI1/KNR4-like › SMI1/KNR4-like 0.52 43.0 3.22e-01 100.0% 81.0%
4600292 10.1.1.35 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 0.52 43.0 3.20e-01 98.6% 62.0%
4024504 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 37.0 3.33e-01 78.3% 74.0%
4956654 298.1.1.24 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.50 43.0 3.19e-01 98.6% 97.9%