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NC_042331.1__YP_009637979.1__FGG33_gp21__00075

Bact-Vir

Identity

Accession:: NC_042331 ↗
Kingdom:: phage

Quality

68.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Benedictvirus› Mycobacterium_phage_Benedict

TaxID: 2902890

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 6-85

PDB

Domain cluster: representative

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1fxkB00	1.10.287.370	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.57	50.0	4.50e-01	98.8%	69.7%
1k8kD02	3.30.1460.20	Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, ›	0.52	37.0	3.22e-01	75.0%	94.7%

ECOD (16)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3786162	192.2.1.1 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2	0.66	47.0	4.39e-01	88.7%	62.1%
3229643	192.2.1.2 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin	0.65	48.0	4.17e-01	100.0%	51.7%
3538408	192.2.1.2 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin	0.63	43.0	4.07e-01	86.3%	60.0%
3790375	192.2.1.0 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin	0.62	47.0	4.06e-01	93.8%	51.2%
5045441	192.2.1.88 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › NFACT_N	0.61	54.0	4.22e-01	98.8%	66.5%
4251848	223.2.1.0 ↗	a+b three layers › Profilin-like › profilin-like › profilin-like	0.58	40.0	3.33e-01	71.2%	83.4%
3940660	3343.1.1.2 ↗	alpha complex topology › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › GCP_C_terminal,GCP_N_terminal	0.58	42.0	2.53e-01	77.5%	32.8%
5033276	101.1.2.14 ↗	alpha arrays › HTH › HTH › winged helix domain › HTH_5	0.57	49.0	4.01e-01	95.0%	76.8%
3718200	192.2.1.0 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin	0.57	49.0	4.20e-01	93.8%	60.0%
4922053	5093.1.1.4 ↗	a+b complex topology › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein › Fusion_gly, Fibritin_C	0.57	52.0	3.26e-01	100.0%	91.7%
3506312	192.2.1.2 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin	0.56	50.0	4.23e-01	100.0%	65.2%
4994522	5086.1.1.0 ↗	alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins	0.56	49.0	3.93e-01	98.8%	75.0%
4938012	2003.1.2.24 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2	0.53	43.0	2.89e-01	92.5%	60.9%
3993316	5067.1.1.0 ↗	alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain	0.53	46.0	3.10e-01	98.8%	49.8%
3360637	192.29.1.0 ↗	alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding)	0.52	45.0	4.13e-01	93.8%	74.0%
3685043	2003.1.2.18 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain	0.52	30.0	2.28e-01	91.3%	24.2%