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NC_042336.1__YP_009638413.1__FGG38_gp52__00052

Bact-Vir

NC_042336.1__YP_009638413.1__FGG38_gp52__00052

Identity

Accession:
NC_042336 ↗
Kingdom:
phage

Quality

82.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 21-92
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02467.22 best Whib 66.3 4.00e-18 88.9% 95.4%
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1l8nA03 3.90.1330.10 Alpha Beta › Alpha-Beta Complex › Alpha-d-glucuronidase, C-terminal Domain › Alpha-glucuronidase, C-terminal domain 0.53 40.0 2.95e-01 83.3% 82.9%
4m0mA04 1.20.1270.440 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.53 39.0 3.40e-01 80.6% 69.2%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3959743 1022.2.1.0 alpha arrays › 4Fe-4S binding domain in Dna2 › 4Fe-4S protein WhiB1 › 4Fe-4S protein WhiB1 0.94 81.0 8.60e-01 91.7% 100.0%
2988223 1022.2.1.1 alpha arrays › 4Fe-4S binding domain in Dna2 › 4Fe-4S protein WhiB1 › 4Fe-4S protein WhiB1 › Whib 0.93 82.0 7.65e-01 93.1% 77.6%
3027027 1022.2.1.1 alpha arrays › 4Fe-4S binding domain in Dna2 › 4Fe-4S protein WhiB1 › 4Fe-4S protein WhiB1 › Whib 0.87 77.0 7.27e-01 94.4% 85.9%
3286828 1022.2.1.1 alpha arrays › 4Fe-4S binding domain in Dna2 › 4Fe-4S protein WhiB1 › 4Fe-4S protein WhiB1 › Whib 0.82 68.0 7.16e-01 88.9% 96.9%
2724064 1022.2.1.1 alpha arrays › 4Fe-4S binding domain in Dna2 › 4Fe-4S protein WhiB1 › 4Fe-4S protein WhiB1 › Whib 0.76 64.0 6.19e-01 94.4% 81.2%
3951668 1022.2.1.1 alpha arrays › 4Fe-4S binding domain in Dna2 › 4Fe-4S protein WhiB1 › 4Fe-4S protein WhiB1 › Whib 0.69 61.0 6.14e-01 97.2% 95.9%