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NC_042341.1__YP_009638874.1__FGG47_gp49__00045

Bact-Vir

NC_042341.1__YP_009638874.1__FGG47_gp49__00045

Identity

Accession:
NC_042341 ↗
Kingdom:
phage

Quality

77.2 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-62
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF23887.2 best Phage_Gene47 80.1 9.30e-23 100.0% 85.9%
CATH (54)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4a53A01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.72 54.0 5.36e-01 88.1% 79.0%
1b44D00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.70 51.0 4.21e-01 78.0% 81.1%
3udcA02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.70 49.0 5.18e-01 89.8% 88.0%
2e12A00 2.30.30.720 Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3247) 0.69 56.0 4.86e-01 91.5% 68.8%
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.69 53.0 5.43e-01 89.8% 94.5%
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.67 55.0 5.54e-01 93.2% 96.6%
1z5hA03 2.60.40.1910 Mainly Beta › Sandwich › Immunoglobulin-like › 0.67 41.0 3.88e-01 89.8% 50.7%
1xf1A05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.67 48.0 4.02e-01 76.3% 95.0%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.66 54.0 4.97e-01 91.5% 72.7%
1aqtA01 2.60.15.10 Mainly Beta › Sandwich › ATP Synthase; domain 1 › F0F1 ATP synthase delta/epsilon subunit, N-terminal 0.66 53.0 4.75e-01 91.5% 81.8%
1uirA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.66 47.0 4.93e-01 76.3% 94.2%
2o07A01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.65 46.0 4.70e-01 78.0% 86.4%
4bt2A01 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.65 40.0 3.28e-01 88.1% 32.5%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.65 50.0 5.02e-01 88.1% 85.0%
6efaA02 3.10.20.890 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.64 46.0 4.17e-01 74.6% 94.9%
1inlC02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.63 45.0 4.44e-01 78.0% 87.5%
2b2cA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.63 45.0 4.48e-01 79.7% 84.4%
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.62 53.0 5.03e-01 100.0% 88.7%
4rs6A01 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.62 47.0 3.78e-01 83.1% 83.9%
2e5wA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.61 45.0 4.57e-01 79.7% 85.7%
5kiqA02 3.10.20.890 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.61 44.0 4.15e-01 76.3% 91.7%
1iy9A02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.61 44.0 4.58e-01 78.0% 98.1%
2eyqA05 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.61 50.0 5.09e-01 94.9% 94.9%
2wweA01 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.61 43.0 3.69e-01 78.0% 89.4%
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.60 51.0 4.84e-01 100.0% 88.9%
3c6kA02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.60 43.0 4.38e-01 78.0% 87.5%
2kieA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.59 49.0 3.83e-01 91.5% 66.9%
5zr6A02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.59 44.0 4.20e-01 88.1% 85.5%
3gkeA01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.59 41.0 3.23e-01 74.6% 33.8%
4geqB00 3.30.160.430 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.59 41.0 4.22e-01 74.6% 77.6%
4c5wA01 3.30.2020.30 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › 0.59 44.0 3.80e-01 83.1% 85.6%
5yjwA00 3.50.50.100 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › 0.58 47.0 2.84e-01 94.9% 27.1%
5dn6I00 2.60.15.10 Mainly Beta › Sandwich › ATP Synthase; domain 1 › F0F1 ATP synthase delta/epsilon subunit, N-terminal 0.58 44.0 4.13e-01 84.7% 89.3%
2e5yA01 2.60.15.10 Mainly Beta › Sandwich › ATP Synthase; domain 1 › F0F1 ATP synthase delta/epsilon subunit, N-terminal 0.56 36.0 3.21e-01 96.6% 43.2%
2ldmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 40.0 4.16e-01 86.4% 86.8%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 42.0 4.08e-01 93.2% 73.5%
2ichA02 2.40.370.10 Mainly Beta › Beta Barrel › AttH-like fold › AttH-like domain 0.56 43.0 3.37e-01 84.7% 93.1%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.56 43.0 4.28e-01 91.5% 93.7%
2vknA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 44.0 4.33e-01 91.5% 97.0%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 40.0 3.95e-01 89.8% 72.7%
2r0xA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 47.0 3.52e-01 100.0% 37.8%
3oajA02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.54 37.0 2.84e-01 71.2% 43.8%
4z32C02 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.54 44.0 3.67e-01 88.1% 83.8%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 42.0 4.19e-01 89.8% 85.5%
1mhnA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 40.0 4.02e-01 98.3% 84.7%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 42.0 4.17e-01 91.5% 87.1%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 38.0 3.89e-01 83.1% 79.7%
2mamA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 39.0 3.30e-01 86.4% 81.4%
3cp3A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 45.0 3.56e-01 98.3% 45.7%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 41.0 4.00e-01 96.6% 90.0%
2ol5A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 41.0 2.98e-01 96.6% 29.5%
4qrlA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.51 41.0 3.40e-01 89.8% 90.0%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 36.0 3.68e-01 86.4% 82.1%
2jozA01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 39.0 3.40e-01 86.4% 85.4%
ECOD (83)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3959440 4.1.1.180 beta barrels › SH3 › SH3 › SH3 › DUF3107 0.78 64.0 6.22e-01 91.5% 100.0%
4400642 4.1.1.257 beta barrels › SH3 › SH3 › SH3 › Flag1_repress 0.75 56.0 5.02e-01 88.1% 56.5%
5015352 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 60.0 5.39e-01 89.8% 65.1%
3712219 4.1.1.19 beta barrels › SH3 › SH3 › SH3 › LSM 0.74 61.0 5.99e-01 93.2% 83.1%
4932434 4.1.1.364 beta barrels › SH3 › SH3 › SH3 › GatD_N 0.74 56.0 5.36e-01 91.5% 70.0%
5080336 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 57.0 5.57e-01 93.2% 78.1%
858452 4.1.1.476 beta barrels › SH3 › SH3 › SH3 › PF30873 0.74 61.0 5.27e-01 100.0% 58.3%
5027750 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 56.0 5.77e-01 93.2% 92.7%
135648 4.1.1.142 beta barrels › SH3 › SH3 › SH3 › Hfq_1 0.73 54.0 5.29e-01 88.1% 73.8%
25624 4.1.1.45 beta barrels › SH3 › SH3 › SH3 › DUF903 0.73 56.0 5.81e-01 88.1% 98.1%
3839016 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.72 55.0 5.37e-01 93.2% 76.9%
3968342 4.1.1.45 beta barrels › SH3 › SH3 › SH3 › DUF903 0.72 55.0 5.75e-01 88.1% 96.2%
4505316 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 57.0 5.75e-01 93.2% 88.3%
3977126 4.1.1.45 beta barrels › SH3 › SH3 › SH3 › DUF903 0.72 57.0 5.82e-01 91.5% 96.4%
4368811 4.1.1.364 beta barrels › SH3 › SH3 › SH3 › GatD_N 0.72 56.0 5.77e-01 94.9% 92.7%
4214438 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.71 58.0 5.70e-01 98.3% 83.1%
4248855 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.71 59.0 5.50e-01 96.6% 74.3%
4139090 4.1.1.364 beta barrels › SH3 › SH3 › SH3 › GatD_N 0.71 54.0 5.58e-01 93.2% 90.9%
5048974 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 57.0 4.73e-01 91.5% 56.4%
4142364 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.71 49.0 4.76e-01 86.4% 66.2%
5062120 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 57.0 4.78e-01 91.5% 68.6%
4540843 4.1.1.434 beta barrels › SH3 › SH3 › SH3 › DUF2642 0.70 53.0 5.19e-01 98.3% 75.4%
4068333 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.70 55.0 5.39e-01 88.1% 78.5%
5061147 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 57.0 4.90e-01 91.5% 68.4%
4982354 4.7.1.0 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.69 55.0 5.43e-01 91.5% 90.8%
3954254 4.1.1.387 beta barrels › SH3 › SH3 › SH3 › SH3_Rv0428c 0.69 56.0 5.51e-01 94.9% 83.1%
5059830 4.7.1.0 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.69 56.0 4.90e-01 91.5% 75.6%
5029405 4.17.1.1 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.69 53.0 5.44e-01 91.5% 90.9%
3979842 4.1.1.45 beta barrels › SH3 › SH3 › SH3 › DUF903 0.68 54.0 5.51e-01 93.2% 96.4%
185635 4.1.1.391 beta barrels › SH3 › SH3 › SH3 › FDF, PF30873 0.68 58.0 4.68e-01 100.0% 55.4%
5056826 4.17.1.1 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.68 55.0 5.34e-01 91.5% 81.5%
5053225 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 53.0 4.57e-01 89.8% 68.0%
4157193 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.68 54.0 5.15e-01 91.5% 75.7%
4252954 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.68 56.0 5.33e-01 98.3% 78.6%
4284778 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.67 56.0 5.20e-01 93.2% 78.7%
4945344 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 57.0 3.61e-01 98.3% 21.8%
5053906 4.17.1.1 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.67 56.0 5.58e-01 93.2% 91.7%
3364309 220.1.1.76 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.66 55.0 4.31e-01 93.2% 88.5%
4432457 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.66 52.0 5.01e-01 93.2% 75.7%
4071824 4.17.1.1 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.66 53.0 4.99e-01 91.5% 76.0%
4093911 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.66 54.0 5.09e-01 94.9% 74.7%
5050320 4.17.1.1 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.66 54.0 5.02e-01 93.2% 72.0%
3687350 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 49.0 5.01e-01 83.1% 90.9%
4277213 4.1.1.431 beta barrels › SH3 › SH3 › SH3 › PF27152 0.65 48.0 4.63e-01 88.1% 68.6%
3439990 220.1.1.76 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.65 52.0 4.55e-01 88.1% 86.7%
5028741 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 50.0 5.11e-01 86.4% 90.9%
4226849 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.65 54.0 4.92e-01 94.9% 70.0%
4044269 4.17.1.1 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.65 53.0 5.04e-01 93.2% 77.1%
5024227 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 52.0 5.12e-01 91.5% 87.3%
4459365 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.65 54.0 4.92e-01 94.9% 71.2%
4034031 4056.1.1.0 beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein 0.65 48.0 4.69e-01 81.4% 89.2%
4971470 4.17.1.1 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.65 52.0 4.89e-01 93.2% 72.0%
3767975 220.1.1.38 beta barrels › PH domain-like › PH domain-like › PH domain-like › UCH_N 0.65 53.0 4.38e-01 91.5% 71.8%
4979291 4.17.1.1 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.64 53.0 4.90e-01 93.2% 73.3%
3260945 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 52.0 5.20e-01 94.9% 96.7%
4616207 4.1.1.448 beta barrels › SH3 › SH3 › SH3 › DUF5372 0.63 45.0 4.76e-01 78.0% 98.0%
4158712 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.63 50.0 4.80e-01 93.2% 77.1%
5031165 4.1.1.93 beta barrels › SH3 › SH3 › SH3 › 40S_S4_C 0.62 53.0 5.10e-01 100.0% 90.0%
4120629 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.61 49.0 4.68e-01 96.6% 78.7%
4593997 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 50.0 4.96e-01 98.3% 90.8%
5022848 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 50.0 5.06e-01 98.3% 96.7%
4629735 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 48.0 4.73e-01 98.3% 92.3%
4943273 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 49.0 4.78e-01 98.3% 90.8%
4025829 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 43.0 4.46e-01 89.8% 90.9%
2427475 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 42.0 4.11e-01 91.5% 74.6%
3928729 5.1.3.6 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.56 47.0 3.19e-01 91.5% 45.0%
4537356 4.1.1.58 beta barrels › SH3 › SH3 › SH3 › SH3_3 0.56 40.0 4.04e-01 78.0% 100.0%
4161673 4.1.1.105 beta barrels › SH3 › SH3 › SH3 › DUF5604 0.56 41.0 3.77e-01 89.8% 57.6%
2727964 4.1.1.105 beta barrels › SH3 › SH3 › SH3 › DUF5604 0.55 41.0 4.16e-01 88.1% 83.1%
3989353 9.9.1.1 beta barrels › Lipocalins/Streptavidin › Hypothetical protein YwiB › Hypothetical protein YwiB › DUF1934 0.55 43.0 3.47e-01 88.1% 99.2%
4929875 4.11.1.0 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.54 43.0 3.80e-01 98.3% 56.0%
3513923 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.54 42.0 3.96e-01 89.8% 77.3%
3781383 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.54 43.0 3.86e-01 94.9% 68.9%
3917372 4.1.1.101 beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.54 40.0 3.75e-01 88.1% 65.3%
3660358 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.54 41.0 4.18e-01 93.2% 90.0%
3873942 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.54 40.0 3.99e-01 86.4% 90.8%
4027502 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.53 41.0 4.02e-01 86.4% 76.9%
3742938 4.1.1.102 beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.53 40.0 3.91e-01 86.4% 80.0%
1889033 2004.1.1.203 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD_C_2 0.53 43.0 2.92e-01 96.6% 42.4%
3592540 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.53 40.0 4.04e-01 89.8% 86.7%
3702154 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.52 42.0 3.97e-01 96.6% 78.7%
3478898 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.52 40.0 3.96e-01 93.2% 81.5%
3782038 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.51 39.0 3.48e-01 91.5% 54.0%