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NC_042342.1__YP_009638925.1__FGG48_gp10__00010

Bact-Vir

NC_042342.1__YP_009638925.1__FGG48_gp10__00010

Identity

Accession:
NC_042342 ↗
Kingdom:
phage

Quality

91.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Hollowayvirus› Pseudomonas_phage_H66

TaxID: 2928683

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-54
PDB
Domain cluster: rep: NC_074746.1__YP_010773782.1__QJS19_gp06__00006__D7-53
D2 high residues 60-139
PDB
Domain cluster: rep: MK291445.1__AZV00424.1__pyei1_p07__00007__D165-223
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04447.18 best dATP-dGTP_PPHyd 59.6 3.90e-16 96.2% 72.2%
D3 high residues 145-218
PDB
Domain cluster: representative
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2k1gA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.67 46.0 3.86e-01 71.6% 49.6%
4zfjD00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.60 46.0 3.32e-01 85.1% 67.4%
2pnqA00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.60 53.0 3.35e-01 100.0% 83.8%
2qsdB02 3.50.100.10 Alpha Beta › 3-Layer(bba) Sandwich › protein il1583 fold › protein il1583 domain 0.58 37.0 3.70e-01 81.1% 62.8%
1wdeA02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.57 43.0 3.35e-01 82.4% 73.6%
6qlyA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.56 40.0 3.91e-01 75.7% 88.0%
1wh2A01 3.30.1490.40 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain 0.56 34.0 3.67e-01 73.0% 72.1%
2r7kA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.56 38.0 4.07e-01 71.6% 98.4%
2htdB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 39.0 3.33e-01 74.3% 60.5%
6b9tF01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 42.0 3.57e-01 82.4% 78.4%
2vfrA02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.55 38.0 3.23e-01 73.0% 81.5%
1wgrA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.55 38.0 3.72e-01 73.0% 89.0%
5u55A02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 42.0 3.62e-01 85.1% 77.9%
1ln0A00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.54 38.0 3.59e-01 74.3% 89.1%
1w1oA02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.54 41.0 3.52e-01 83.8% 94.5%
4bpuC00 3.90.920.10 Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain 0.54 40.0 2.63e-01 82.4% 77.4%
2i0kA02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.54 37.0 3.19e-01 71.6% 82.5%
1txkA01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.54 46.0 3.01e-01 98.6% 52.3%
3purA02 2.60.120.650 Mainly Beta › Sandwich › Jelly Rolls › Cupin 0.53 39.0 2.67e-01 79.7% 84.3%
1wp5A00 2.120.10.90 Mainly Beta › 6 Propeller › Neuraminidase › DNA gyrase/topoisomerase IV, subunit A, C-terminal 0.53 47.0 3.11e-01 100.0% 91.6%
1dq3A01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.53 36.0 2.82e-01 73.0% 97.7%
5jv4A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 36.0 2.97e-01 71.6% 57.0%
1grjA02 3.10.50.30 Alpha Beta › Roll › Chitinase A; domain 3 › Transcription elongation factor, GreA/GreB, C-terminal domain 0.52 35.0 3.52e-01 70.3% 90.9%
4wgkA02 2.60.40.2300 Mainly Beta › Sandwich › Immunoglobulin-like › Neutral/alkaline non-lysosomal ceramidase, C-terminal domain 0.52 42.0 3.48e-01 89.2% 85.0%
2kkcA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.52 36.0 3.34e-01 74.3% 86.0%
5xctB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 40.0 3.58e-01 89.2% 92.0%
4qglA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 34.0 2.71e-01 71.6% 35.1%
2w5fB01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.50 37.0 3.04e-01 81.1% 77.6%
3obyA01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.50 37.0 3.35e-01 81.1% 82.6%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3225783 217.1.1.1 ↗ a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_5 0.60 46.0 3.39e-01 83.8% 86.2%
3926832 384.1.1.1 ↗ few secondary structure elements › BPTI-like › BPTI-like › BPTI-like › Kunitz_BPTI 0.60 35.0 3.43e-01 75.7% 51.2%
3510207 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.59 44.0 3.34e-01 81.1% 40.5%
3200782 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.59 41.0 3.82e-01 74.3% 80.0%
5080080 2003.1.5.19 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › TRM 0.58 48.0 3.04e-01 90.5% 53.2%
3183944 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.58 40.0 3.27e-01 73.0% 52.4%
3481861 221.1.1.36 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › FERM_N 0.58 40.0 4.00e-01 74.3% 90.0%
5077562 4.1.2.2 ↗ beta barrels › SH3 › SH3 › Stringent starvation protein B, SspB › MJ1316 0.57 44.0 4.42e-01 83.8% 96.0%
3695427 822.1.1.1 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF 0.57 38.0 3.80e-01 82.4% 66.7%
5022231 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 37.0 3.23e-01 77.0% 40.8%
3688295 221.1.1.73 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RASSF8-10_RA 0.56 38.0 3.73e-01 71.6% 88.2%
3476233 221.1.1.6 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.56 43.0 3.98e-01 85.1% 87.0%
3725643 217.1.1.0 ↗ a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain 0.56 42.0 2.97e-01 81.1% 52.2%
1891842 221.1.1.6 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.55 43.0 3.90e-01 86.5% 86.8%
4877615 221.1.1.36 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › FERM_N 0.55 39.0 3.82e-01 77.0% 90.2%
3541328 355.1.1.6 ↗ few secondary structure elements › Trefoil/Plexin domain-like › Trefoil/Plexin domain-like › Trefoil/Plexin domain-like › MGC-24 0.55 29.0 3.34e-01 74.3% 70.0%
3538070 219.1.1.50 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH_1 0.54 42.0 2.54e-01 83.8% 56.2%
3798349 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.54 37.0 3.64e-01 74.3% 89.4%
4609257 5.2.1.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.54 40.0 2.69e-01 82.4% 34.3%
3228278 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 39.0 4.07e-01 78.4% 98.5%
5077796 304.104.1.1 ↗ a+b two layers › Alpha-beta plaits › Sulfolobus fructose-1,6-bisphosphatase-like › Sulfolobus fructose-1,6-bisphosphatase-like › FBPase_3 0.53 44.0 2.97e-01 100.0% 47.9%
3232920 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.53 37.0 3.46e-01 74.3% 96.8%
6185 221.1.1.4 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 0.52 41.0 3.72e-01 87.8% 83.8%
4994 822.1.1.1 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF 0.52 37.0 3.70e-01 90.5% 73.1%
3397134 379.1.1.0 ↗ few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.52 33.0 3.71e-01 70.3% 96.0%
3745675 221.1.1.4 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 0.52 37.0 3.29e-01 75.7% 78.2%
3274993 10.12.1.52 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_8 0.52 44.0 2.84e-01 97.3% 69.9%
3826611 12.5.1.14 ↗ beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › DUF1191 0.52 39.0 2.97e-01 83.8% 83.1%
4382059 12.3.1.24 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › YidC_periplas 0.51 44.0 3.05e-01 100.0% 95.1%
3562855 11.1.1.614 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_ZP2 0.51 40.0 3.48e-01 85.1% 80.9%
3919495 109.4.1.20 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RYDR_ITPR 0.51 39.0 2.15e-01 82.4% 8.9%
4024080 7516.1.1.0 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases 0.51 41.0 2.68e-01 87.8% 47.1%
5051788 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.51 37.0 3.39e-01 79.7% 100.0%
3936178 11.1.1.848 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7585 0.50 42.0 3.11e-01 91.9% 87.4%