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NC_042346.1__YP_009639243.1__FGG71_gp38__00038

Bact-Vir

NC_042346.1__YP_009639243.1__FGG71_gp38__00038

Identity

Accession:
NC_042346 ↗
Kingdom:
phage

Quality

87.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Lederbergvirus› Lederbergvirus_BTP1

TaxID: 1934252

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 19-147
PDB
Domain cluster: rep: NC_048757.1__YP_009844908.1__HWC13_gp099__00099__D4-117
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ysiA01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.58 18.0 3.13e-01 78.3% 90.9%
6mptA02 3.40.630.190 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › LCP protein 0.54 31.0 3.63e-01 84.5% 82.1%
3hr8A02 3.30.250.10 Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › RecA protein, C-terminal domain 0.53 32.0 3.87e-01 74.4% 100.0%
1owlA02 1.25.40.80 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.51 34.0 3.52e-01 89.1% 71.5%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5075418 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.76 39.0 5.48e-01 72.1% 100.0%
3163642 101.1.9.63 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Bro-N 0.71 55.0 5.88e-01 98.4% 94.5%
4033119 101.1.9.63 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Bro-N 0.65 48.0 5.30e-01 94.6% 99.0%
3203041 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.62 43.0 4.81e-01 92.2% 93.0%
3532811 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.58 34.0 3.71e-01 86.8% 69.1%
3265851 64.1.1.1 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW 0.57 21.0 3.32e-01 89.1% 95.0%
4228475 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.56 42.0 4.00e-01 78.3% 86.0%
3734533 108.1.1.119 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › DUF7514 0.54 43.0 3.98e-01 95.3% 64.7%
3277927 223.3.1.0 ↗ a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins 0.53 42.0 3.40e-01 85.3% 79.2%
3750730 304.11.1.0 ↗ a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase 0.53 31.0 3.69e-01 74.4% 91.3%
3169213 304.48.1.10 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › IMS 0.53 40.0 3.41e-01 81.4% 97.3%
4182872 193.3.1.1 ↗ alpha bundles › CH domain-like › Surface-layer homology (SLH) domains › Surface-layer homology (SLH) domains › SLH 0.51 39.0 3.60e-01 82.2% 93.1%
D2 high residues 154-297
PDB
Domain cluster: rep: MG209611.1__ATW59330.1__Cl131_gp062__00062__D116-230
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF26567.1 best BstA_C 141.2 2.50e-41 86.1% 100.0%
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2hfvA01 3.30.70.790 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain 0.57 30.0 3.92e-01 83.3% 92.2%
4djbA00 3.30.70.2870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Mastadenovirus E4 ORF3 0.56 40.0 4.34e-01 86.1% 89.8%
5d4nC00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 30.0 3.51e-01 70.8% 74.5%
4i5jA01 1.10.238.220 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › 0.54 36.0 3.99e-01 75.7% 89.0%
3pm9A04 3.30.70.2740 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 32.0 4.03e-01 83.3% 100.0%
4mtnA01 3.30.1480.10 Alpha Beta › 2-Layer Sandwich › N Utilization Substance Protein A; Chain:P; domain 4 › NusA, N-terminal domain 0.53 34.0 4.03e-01 72.9% 97.9%
1xcjA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 37.0 3.21e-01 70.8% 92.6%
3vtiA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 28.0 3.38e-01 79.9% 77.1%
3bb5A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 32.0 3.63e-01 71.5% 83.5%
5h0pA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.51 29.0 3.36e-01 91.7% 76.5%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3683773 304.114.1.0 ↗ a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain 0.62 39.0 4.13e-01 77.1% 70.0%
3577533 304.114.1.0 ↗ a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain 0.61 38.0 4.17e-01 77.1% 75.0%
4230774 101.1.9.117 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_assoc 0.61 27.0 3.23e-01 75.0% 60.0%
3550113 4969.1.1.0 ↗ alpha bundles › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I 0.61 38.0 4.03e-01 76.4% 70.4%
3711289 304.114.1.0 ↗ a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain 0.60 37.0 4.27e-01 75.0% 83.8%
3741555 4969.1.1.0 ↗ alpha bundles › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I 0.60 37.0 3.23e-01 76.4% 38.3%
3759055 304.114.1.0 ↗ a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain 0.60 37.0 4.01e-01 76.4% 70.4%
4649118 2484.1.1.197 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1, DNA_pol_B_exo2 0.60 38.0 2.76e-01 76.4% 22.3%
3166912 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 36.0 3.32e-01 75.7% 46.3%
4554366 304.114.1.0 ↗ a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain 0.58 36.0 3.99e-01 76.4% 77.4%
4405678 304.114.1.6 ↗ a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain › DNA_pol_B_exo1 0.58 36.0 3.01e-01 76.4% 33.6%
3341373 101.1.2.90 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_9 0.58 24.0 2.92e-01 83.3% 55.8%
3508551 304.114.1.0 ↗ a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain 0.57 35.0 3.83e-01 76.4% 72.5%
1288930 304.114.1.0 ↗ a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain 0.57 32.0 3.73e-01 70.1% 77.2%
4975863 103.5.1.0 ↗ alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like 0.56 30.0 3.88e-01 73.6% 92.5%
3661545 327.11.2.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.55 33.0 3.86e-01 74.3% 86.0%
4674139 101.1.9.30 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Pescadillo_N 0.53 33.0 3.45e-01 79.9% 67.7%
4028284 327.11.2.11 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1_3 0.51 36.0 3.82e-01 83.3% 82.3%
5072186 242.1.1.7 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.50 28.0 3.13e-01 82.6% 69.5%