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NC_042350.1__YP_009639428.1__FGG64_gp03__00003

Bact-Vir

NC_042350.1__YP_009639428.1__FGG64_gp03__00003

Identity

Accession:
NC_042350 ↗
Kingdom:
phage

Quality

63.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 225-275_292-336
PDB
D2 high residues 402-447
PDB
D3 medium residues 1-54
PDB
D4 medium residues 55-128_211-224_344-371
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4h5bA00 3.30.1460.70 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.55 46.0 4.23e-01 91.4% 88.8%
1zc1A02 3.10.330.10 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.53 25.0 3.01e-01 81.0% 64.9%
1f02T00 4.10.820.10 Few Secondary Structures › Irregular › Translocated Intimin Receptor; Chain T › Translocated intimin receptor, central domain 0.50 29.0 3.65e-01 75.9% 98.5%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4030181 148.1.3.17 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › MCM_lid 0.58 41.0 3.60e-01 99.1% 49.4%
3291545 3859.1.1.0 alpha arrays › uncharacterized protein BT_1490 C-terminal domain › uncharacterized protein BT_1490 C-terminal domain › uncharacterized protein BT_1490 C-terminal domain 0.57 38.0 3.72e-01 86.2% 61.6%
4025741 310.2.1.1 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF 0.56 30.0 2.64e-01 75.9% 31.7%
2639388 101.1.2.455 alpha arrays › HTH › HTH › winged helix domain › HTH_CDT1 0.53 38.0 3.64e-01 75.0% 83.9%
3972586 377.1.1.11 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › RecO_C 0.53 39.0 3.56e-01 77.6% 59.4%
3596210 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.50 44.0 2.79e-01 99.1% 24.6%
D5 medium residues 129-210
PDB
Domain cluster: representative
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2bs6A01 2.40.128.190 Mainly Beta › Beta Barrel › Lipocalin › 0.69 40.0 4.05e-01 87.8% 57.1%
2a22B00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.67 46.0 3.42e-01 70.7% 95.6%
2codA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 43.0 4.09e-01 70.7% 100.0%
3mswA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.62 50.0 4.14e-01 86.6% 62.6%
4x2oA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 49.0 3.79e-01 85.4% 92.2%
3ci0J01 3.10.610.10 Alpha Beta › Roll › Pili subunits › GSPII I/J protein-like 0.60 44.0 4.12e-01 78.0% 66.3%
1foeC02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 51.0 4.03e-01 92.7% 96.9%
4it7A00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 40.0 3.73e-01 70.7% 88.8%
2gkpA00 3.40.1590.10 Alpha Beta › 3-Layer(aba) Sandwich › NMB0488-like fold › NMB0488-like 0.59 41.0 3.23e-01 72.0% 87.1%
3lm3A02 3.30.1120.110 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.58 44.0 4.06e-01 80.5% 95.3%
3ei3A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 50.0 3.40e-01 100.0% 59.2%
1xksA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 50.0 3.28e-01 98.8% 43.3%
1jpdX01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.57 41.0 3.92e-01 75.6% 99.0%
2obdA02 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.57 46.0 3.45e-01 85.4% 70.9%
4exrA01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 44.0 4.45e-01 93.9% 84.0%
4c23B01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.57 40.0 2.87e-01 73.2% 73.1%
2wjsA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 49.0 3.91e-01 100.0% 69.1%
3rwxA01 2.40.128.340 Mainly Beta › Beta Barrel › Lipocalin › 0.56 42.0 3.76e-01 81.7% 65.0%
2dfkC02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 44.0 3.65e-01 84.1% 78.0%
3pg7A02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 46.0 4.13e-01 87.8% 80.9%
5z5dA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 51.0 3.77e-01 100.0% 99.0%
4r80A00 3.10.450.630 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 39.0 4.05e-01 73.2% 81.6%
2wjsA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 49.0 3.80e-01 100.0% 61.7%
1yc9A02 2.20.200.10 Mainly Beta › Single Sheet › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.55 38.0 3.88e-01 74.4% 97.6%
3rwxA02 2.40.128.350 Mainly Beta › Beta Barrel › Lipocalin › 0.55 39.0 3.43e-01 76.8% 69.7%
4k17B01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 49.0 4.39e-01 97.6% 97.3%
2z13A00 2.30.29.170 Mainly Beta › Roll › PH-domain like › 0.55 46.0 4.06e-01 91.5% 85.5%
5mc9A02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 48.0 3.75e-01 100.0% 62.6%
1dmzA00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.54 47.0 3.84e-01 98.8% 84.8%
1u5dA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 44.0 4.02e-01 89.0% 94.4%
3qwmA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 39.0 3.44e-01 78.0% 92.1%
1btkA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 44.0 3.49e-01 89.0% 75.0%
1e3uD00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.53 38.0 2.74e-01 75.6% 29.8%
1jkgB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 44.0 3.46e-01 93.9% 91.7%
7qi3A01 3.30.2140.20 Alpha Beta › 2-Layer Sandwich › Arylamine N-acetyltransferase fold › 0.52 45.0 3.03e-01 95.1% 37.9%
3mepA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 47.0 3.64e-01 98.8% 86.0%
1qu0C00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 46.0 3.57e-01 100.0% 60.7%
3sh4A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 46.0 3.50e-01 100.0% 57.4%
5i4nA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 42.0 4.12e-01 93.9% 81.5%
4fekB00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.51 35.0 2.58e-01 72.0% 87.9%
7csoA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 41.0 3.57e-01 87.8% 85.0%
3loyA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 42.0 3.86e-01 96.3% 93.0%
1q25A02 2.70.130.10 Mainly Beta › Distorted Sandwich › Cation-dependent Mannose-6-phosphate Receptor; Chain A › Mannose-6-phosphate receptor binding domain 0.50 41.0 3.48e-01 96.3% 100.0%
ECOD (69)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3437488 5.1.3.159 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF7595 0.75 58.0 3.92e-01 80.5% 38.9%
3942943 4056.1.1.1 beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Phage_prot_Gp6 0.73 68.0 4.69e-01 100.0% 34.1%
3268534 5.1.5.126 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_VPS8 0.69 62.0 4.00e-01 100.0% 61.3%
3410497 5.1.4.164 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_VPS8 0.67 60.0 3.81e-01 100.0% 54.0%
3923143 633.23.1.17 alpha bundles › Bromodomain-like › Claudin › Claudin › DuoxA 0.66 54.0 3.88e-01 90.2% 60.8%
3697524 9.2.1.7 beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › PF30970 0.65 47.0 4.55e-01 80.5% 67.8%
3564421 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 45.0 4.04e-01 72.0% 51.3%
3999197 5.1.4.164 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_VPS8 0.65 58.0 3.77e-01 100.0% 74.9%
None 0.64 58.0 3.77e-01 100.0% 72.6%
4009137 274.1.1.12 a+b two layers › Pili subunits › Pili subunits › Pili subunits › T2SSJ 0.64 51.0 4.10e-01 100.0% 42.9%
3178078 220.1.1.70 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_5 0.63 49.0 3.88e-01 82.9% 81.8%
3928065 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.63 53.0 3.29e-01 90.2% 35.5%
3713007 5.1.4.164 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_VPS8 0.63 56.0 3.57e-01 100.0% 79.0%
3257454 220.1.1.12 beta barrels › PH domain-like › PH domain-like › PH domain-like › Myosin_TH1 0.63 53.0 3.95e-01 92.7% 60.0%
3273324 5.1.4.36 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MMS1_N 0.62 52.0 3.21e-01 90.2% 30.9%
3739453 220.1.1.12 beta barrels › PH domain-like › PH domain-like › PH domain-like › Myosin_TH1 0.62 56.0 4.18e-01 98.8% 63.1%
4363149 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.62 55.0 3.10e-01 97.6% 13.2%
3498371 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.62 51.0 3.18e-01 90.2% 46.9%
4099346 220.1.1.12 beta barrels › PH domain-like › PH domain-like › PH domain-like › Myosin_TH1 0.61 55.0 4.24e-01 97.6% 70.1%
3807375 109.4.1.1306 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1, TPR_11 0.61 50.0 3.33e-01 89.0% 40.9%
3529797 220.1.1.68 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_Tiam1 0.61 51.0 3.99e-01 90.2% 76.5%
3243587 2484.1.1.200 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.61 44.0 2.97e-01 76.8% 45.7%
3238202 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.61 50.0 3.63e-01 90.2% 71.2%
4444906 220.1.1.12 beta barrels › PH domain-like › PH domain-like › PH domain-like › Myosin_TH1 0.61 54.0 3.83e-01 97.6% 54.2%
3608681 5.1.4.164 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_VPS8 0.61 54.0 3.41e-01 100.0% 57.9%
4057601 220.1.1.12 beta barrels › PH domain-like › PH domain-like › PH domain-like › Myosin_TH1 0.61 54.0 4.05e-01 98.8% 62.5%
3226910 2484.1.1.200 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.60 44.0 3.22e-01 76.8% 65.5%
3654131 241.15.1.0 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.60 46.0 3.69e-01 81.7% 45.6%
3936383 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.60 50.0 3.60e-01 90.2% 61.7%
3621256 633.23.1.4 alpha bundles › Bromodomain-like › Claudin › Claudin › Claudin_2 0.60 50.0 3.60e-01 91.5% 61.3%
3441326 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.60 45.0 2.95e-01 80.5% 21.4%
3707278 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 54.0 3.90e-01 100.0% 90.7%
3933073 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.59 46.0 3.49e-01 82.9% 50.0%
3251228 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 48.0 3.95e-01 89.0% 82.8%
3700773 7520.1.1.0 a/b three-layered sandwiches › CinA-like › CinA-like › CinA-like 0.58 47.0 3.63e-01 87.8% 73.9%
1498230 12.1.1.117 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › DUF3864 0.57 46.0 4.12e-01 85.4% 95.5%
3629728 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 47.0 4.01e-01 90.2% 86.7%
3477257 5.1.4.148 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WDR93 0.57 51.0 3.09e-01 100.0% 27.1%
3498461 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.56 49.0 3.27e-01 100.0% 64.7%
6679 274.1.1.12 a+b two layers › Pili subunits › Pili subunits › Pili subunits › T2SSJ 0.56 48.0 3.98e-01 98.8% 54.1%
4986209 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 43.0 3.84e-01 85.4% 100.0%
3484711 5.1.4.242 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PEP5_VPS11_N 0.56 50.0 3.24e-01 100.0% 62.1%
4002730 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.56 49.0 3.73e-01 100.0% 61.5%
4858377 9.13.1.5 beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like › AOC_like 0.56 41.0 4.00e-01 80.5% 84.0%
3564088 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 45.0 4.08e-01 89.0% 93.6%
3707991 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 45.0 3.74e-01 90.2% 97.3%
3479576 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 45.0 4.04e-01 89.0% 74.8%
3852280 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.55 48.0 3.30e-01 100.0% 61.6%
3275677 220.1.1.66 beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.55 45.0 3.58e-01 89.0% 86.3%
3773175 883.1.1.1 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP 0.53 46.0 3.63e-01 98.8% 76.2%
4986251 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.53 42.0 4.12e-01 96.3% 78.9%
3749038 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.53 44.0 3.65e-01 89.0% 92.9%
4027123 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.53 47.0 3.04e-01 98.8% 37.3%
3919311 220.1.1.66 beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.53 43.0 3.77e-01 89.0% 85.6%
3400954 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.53 46.0 3.14e-01 100.0% 43.8%
3635188 206.1.1.11 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.53 40.0 2.53e-01 82.9% 50.6%
3536117 220.1.1.66 beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.53 43.0 3.54e-01 89.0% 73.3%
3625776 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.53 40.0 3.67e-01 81.7% 100.0%
1890003 274.1.1.18 a+b two layers › Pili subunits › Pili subunits › Pili subunits › Tt1219-like 0.53 45.0 3.47e-01 98.8% 68.0%
3430469 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.52 42.0 4.05e-01 91.5% 91.9%
3518268 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 47.0 3.93e-01 97.6% 93.3%
3480143 241.15.1.0 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.52 44.0 3.61e-01 92.7% 52.7%
3372251 6129.1.1.0 beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family 0.52 37.0 4.05e-01 75.6% 92.9%
3760087 883.1.1.1 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP 0.51 44.0 3.38e-01 98.8% 61.5%
3522290 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.51 41.0 3.64e-01 89.0% 80.0%
3640060 4121.1.1.1 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA 0.51 43.0 3.09e-01 96.3% 54.3%
3735913 4121.1.1.1 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA 0.51 44.0 3.01e-01 97.6% 58.4%
3406401 220.1.1.66 beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.50 41.0 3.40e-01 89.0% 70.7%
3228158 220.1.1.66 beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.50 41.0 3.42e-01 89.0% 76.6%