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NC_042350.1__YP_009639436.1__FGG64_gp11__00011

Bact-Vir

NC_042350.1__YP_009639436.1__FGG64_gp11__00011

Identity

Accession:
NC_042350 ↗
Kingdom:
phage

Quality

75.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Holosalinivirus› Salinibacter_phage_M8CR30-2

TaxID: 2681615

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 3-61
PDB
D2 medium residues 83-133
PDB
Domain cluster: representative
D3 medium residues 134-191
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3g2bA00 1.10.10.1150 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Coenzyme PQQ synthesis protein D (PqqD) 0.64 36.0 3.16e-01 81.0% 34.4%
4g7nA02 3.30.1120.130 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.58 39.0 3.33e-01 70.7% 61.9%
3tdnA00 3.40.50.12600 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.57 41.0 3.28e-01 77.6% 58.7%
2iqcA00 1.25.40.490 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.56 42.0 3.02e-01 81.0% 30.1%
3ihvA03 1.25.40.900 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.56 45.0 3.46e-01 89.7% 78.4%
1nstA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 37.0 2.44e-01 70.7% 77.7%
3pfsB00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 40.0 3.14e-01 77.6% 100.0%
4wfsA01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.54 38.0 2.62e-01 75.9% 36.9%
3ebrA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 42.0 3.15e-01 87.9% 90.4%
3w6bB00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.54 44.0 3.34e-01 96.6% 54.9%
2lqoA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.53 38.0 3.47e-01 81.0% 97.7%
7tjbA01 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.53 43.0 3.08e-01 98.3% 91.3%
1cjaA02 1.10.1070.11 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › Phosphatidylinositol 3-/4-kinase, catalytic domain 0.53 44.0 3.14e-01 100.0% 31.1%
2vhjA02 2.30.270.20 Mainly Beta › Roll › duf1285 protein fold › 0.52 33.0 3.32e-01 75.9% 59.7%
2bbwA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 45.0 3.08e-01 100.0% 35.5%
6fndA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.52 35.0 2.55e-01 70.7% 65.6%
3hm6X01 1.10.506.10 Mainly Alpha › Orthogonal Bundle › GTPase Activation - p120GAP; domain 1 › GTPase Activation - p120gap; domain 1 0.52 42.0 2.63e-01 94.8% 19.9%
3vwaA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.50 37.0 2.92e-01 98.3% 34.3%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3641227 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.69 46.0 4.31e-01 93.1% 54.7%
3584532 2004.1.1.51 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Sulfotransfer_1 0.64 42.0 2.81e-01 70.7% 18.1%
4015541 4205.1.1.0 ↗ a+b two layers › SMI1/KNR4-like › SMI1/KNR4-like › SMI1/KNR4-like 0.63 50.0 3.51e-01 94.8% 37.8%
4028911 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.60 49.0 3.98e-01 100.0% 92.3%
3450074 11.2.1.37 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › DUF6598 0.60 39.0 2.89e-01 87.9% 23.6%
3451911 11.2.1.37 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › DUF6598 0.58 40.0 2.84e-01 91.4% 22.1%
3928208 304.163.1.0 ↗ a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain 0.57 50.0 4.61e-01 100.0% 78.7%
184630 109.4.1.153 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › FANCF 0.56 42.0 3.02e-01 81.0% 30.1%
4108459 2003.1.5.23 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_4 0.56 46.0 3.12e-01 93.1% 49.3%
3195307 109.1.1.37 ↗ alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › GST_N_2 0.55 42.0 2.97e-01 87.9% 31.8%
3619566 5051.1.1.6 ↗ alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Aa_trans 0.53 44.0 2.75e-01 94.8% 43.6%
3512150 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.53 46.0 4.29e-01 100.0% 81.3%
3790093 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.53 44.0 2.64e-01 100.0% 35.1%
3628118 5051.1.1.6 ↗ alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Aa_trans 0.53 43.0 2.65e-01 94.8% 54.9%
3317170 386.1.1.4 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.53 38.0 4.14e-01 79.3% 100.0%
3282845 304.8.1.26 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF3145 0.52 44.0 3.35e-01 100.0% 41.3%
3581477 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.51 37.0 3.98e-01 77.6% 100.0%
3176914 3519.1.1.1 ↗ beta complex topology › Myoferlin inner DysF domain › Myoferlin inner DysF domain › Myoferlin inner DysF domain › Pex24p 0.51 35.0 2.82e-01 74.1% 68.3%
3734087 2485.1.1.39 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › GST_N_2 0.50 39.0 3.34e-01 94.8% 71.3%