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NC_042350.1__YP_009639445.1__FGG64_gp20__00020

Bact-Vir

NC_042350.1__YP_009639445.1__FGG64_gp20__00020

Identity

Accession:
NC_042350 ↗
Kingdom:
phage

Quality

59.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Holosalinivirus› Salinibacter_phage_M8CR30-2

TaxID: 2681615

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 299-601
PDB
D2 medium residues 1-144
PDB
D3 medium residues 187-236
PDB
D4 medium residues 655-718
PDB
D5 medium residues 1056-1096_1117-1144
PDB
D6 medium residues 1201-1212_1312-1371
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3u97A00 3.10.450.530 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Ribonuclease toxin, BrnT, of type II toxin-antitoxin system 0.72 43.0 4.27e-01 70.8% 57.1%
3rbyA01 2.40.128.320 Mainly Beta › Beta Barrel › Lipocalin › Protein HRI1, N-terminal domain 0.57 44.0 3.57e-01 87.5% 65.3%
3n8bA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 45.0 4.45e-01 100.0% 85.3%
2mj7A00 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.56 42.0 3.40e-01 80.6% 77.3%
1avgI00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 40.0 3.32e-01 97.2% 40.1%
3cnwA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 42.0 3.44e-01 86.1% 56.7%
3t5oA03 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.52 35.0 3.72e-01 87.5% 80.6%
4mp8A01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.52 45.0 3.54e-01 100.0% 78.3%
4ifdE00 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.52 41.0 2.85e-01 88.9% 64.8%
3cqzH00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 39.0 3.34e-01 80.6% 88.8%
3jtzA00 3.30.160.390 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Integrase, DNA-binding domain 0.51 37.0 3.64e-01 100.0% 72.7%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4023327 9.2.1.3 ↗ beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › FBO_C 0.58 51.0 3.70e-01 97.2% 86.5%
3617894 9.1.1.45 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › FBO_C 0.57 50.0 3.90e-01 98.6% 46.5%
3188943 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.54 45.0 2.94e-01 100.0% 47.7%
3714509 220.1.1.303 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26278 0.53 45.0 3.53e-01 94.4% 94.8%
3341315 298.1.1.6 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › G6PD_C 0.52 44.0 2.88e-01 93.1% 74.2%
3784777 220.1.1.32 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Sec3-PIP2_bind 0.52 45.0 3.50e-01 100.0% 55.8%
5019287 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.51 38.0 3.64e-01 80.6% 77.6%
3481533 11.2.1.14 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › RPGR1_C 0.50 38.0 2.96e-01 84.7% 74.4%
D7 medium residues 1228-1311
PDB
Domain cluster: representative
CATH (58)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3iuwA00 2.30.130.30 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › Hypothetical protein. 0.76 49.0 5.09e-01 75.0% 69.6%
2as9B01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.72 48.0 4.57e-01 91.7% 57.4%
1wczA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.68 47.0 4.28e-01 91.7% 53.0%
2l1tA00 2.30.110.70 Mainly Beta › Roll › Pnp Oxidase; Chain A › 0.67 51.0 4.73e-01 95.2% 63.3%
4r8tB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.63 42.0 4.49e-01 91.7% 79.5%
3lq6A02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.63 57.0 5.15e-01 100.0% 81.6%
2gpjA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.63 53.0 5.07e-01 100.0% 79.0%
4lduA03 2.30.30.1040 Mainly Beta › Roll › SH3 type barrels. › 0.62 47.0 5.12e-01 79.8% 100.0%
4n0rA03 2.60.40.3950 Mainly Beta › Sandwich › Immunoglobulin-like › 0.62 49.0 4.49e-01 98.8% 65.5%
3k6yA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.62 50.0 4.59e-01 91.7% 67.3%
2v9kA04 3.30.70.3190 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 52.0 4.82e-01 96.4% 83.5%
1e62A01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.61 53.0 4.67e-01 97.6% 73.4%
6j0qA02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.61 53.0 4.95e-01 100.0% 79.8%
4qv2A02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.60 53.0 4.78e-01 100.0% 78.0%
3q39B02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.60 52.0 4.85e-01 100.0% 80.0%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 47.0 5.04e-01 89.3% 100.0%
1cqxA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.60 53.0 4.87e-01 100.0% 78.4%
1n26A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 39.0 4.05e-01 97.6% 71.8%
2ijzA02 2.30.250.10 Mainly Beta › Roll › Aminopeptidase i, Domain 2 › Aminopeptidase i, Domain 2 0.59 51.0 4.77e-01 98.8% 84.1%
4lk4A01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.59 49.0 4.29e-01 91.7% 60.8%
2z13A00 2.30.29.170 Mainly Beta › Roll › PH-domain like › 0.59 45.0 4.04e-01 81.0% 75.2%
3zpeA00 2.60.90.50 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › 0.59 44.0 3.84e-01 100.0% 50.0%
1xhnA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 45.0 3.67e-01 83.3% 68.1%
4yhbA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.59 52.0 4.53e-01 100.0% 77.5%
2gtlN02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.58 48.0 3.92e-01 94.0% 86.5%
5jgfA02 2.30.250.10 Mainly Beta › Roll › Aminopeptidase i, Domain 2 › Aminopeptidase i, Domain 2 0.58 49.0 4.23e-01 100.0% 87.6%
2mc2A00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.57 47.0 3.56e-01 90.5% 100.0%
2h41A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 39.0 3.77e-01 100.0% 62.1%
4odbA00 2.60.90.20 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Virus attachment protein , globular domain 0.57 49.0 4.07e-01 100.0% 52.5%
5jm6A02 2.30.250.10 Mainly Beta › Roll › Aminopeptidase i, Domain 2 › Aminopeptidase i, Domain 2 0.57 48.0 4.17e-01 100.0% 87.4%
3dnhA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 43.0 3.67e-01 84.5% 65.6%
6brbD00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 38.0 3.78e-01 100.0% 66.7%
4ic5A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.56 43.0 4.03e-01 92.9% 66.3%
4wtxA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 40.0 3.83e-01 100.0% 64.9%
4bi3A01 3.90.1720.80 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.56 37.0 3.65e-01 97.6% 62.6%
2ptfA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 46.0 3.88e-01 92.9% 98.0%
3buuB00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.56 46.0 3.46e-01 92.9% 91.4%
2gtlM02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.56 44.0 3.63e-01 89.3% 94.6%
2vpaA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 44.0 3.40e-01 92.9% 36.3%
1kbaA00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.56 31.0 3.47e-01 81.0% 68.2%
6r3wA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 43.0 3.61e-01 88.1% 96.3%
5dl8A00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.55 42.0 2.76e-01 83.3% 73.7%
3l5iA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 39.0 3.84e-01 100.0% 70.5%
1c77B00 3.10.20.130 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.55 40.0 3.52e-01 77.4% 84.4%
1r0mA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.54 41.0 3.54e-01 79.8% 96.9%
4hudA01 3.30.2000.40 Alpha Beta › 2-Layer Sandwich › STM4215-like › Myoviridae tail sheath stabiliser 0.54 46.0 3.53e-01 96.4% 87.1%
1owwA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 37.0 3.63e-01 100.0% 64.5%
7y8sA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 40.0 3.92e-01 100.0% 71.6%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.54 38.0 4.34e-01 81.0% 100.0%
7oc3A01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 39.0 3.86e-01 83.3% 71.7%
2kvtA00 3.30.730.30 Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › YaiA protein 0.53 33.0 3.53e-01 81.0% 73.2%
2f5tX02 2.30.30.690 Mainly Beta › Roll › SH3 type barrels. › 0.53 45.0 4.46e-01 96.4% 93.3%
4ghbA00 2.40.160.190 Mainly Beta › Beta Barrel › Porin › 0.52 39.0 2.79e-01 79.8% 98.4%
4p04A01 2.60.40.3100 Mainly Beta › Sandwich › Immunoglobulin-like › Arylsulphate sulphotransferase monomer, N-terminal domain 0.52 38.0 3.55e-01 98.8% 62.3%
3ub1A01 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 39.0 3.35e-01 81.0% 87.5%
1bywA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 37.0 3.48e-01 78.6% 98.2%
3h96C00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 37.0 3.27e-01 81.0% 52.9%
1b7eA01 3.90.350.10 Alpha Beta › Alpha-Beta Complex › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 0.51 41.0 2.98e-01 90.5% 50.8%
ECOD (75)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3968097 1.1.5.25 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.76 56.0 5.13e-01 85.7% 60.0%
3936663 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.75 68.0 5.94e-01 100.0% 80.0%
4960051 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.75 56.0 4.40e-01 82.1% 38.5%
3702149 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.73 65.0 5.21e-01 97.6% 58.1%
3924486 2004.1.1.184 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_11 0.72 65.0 3.99e-01 100.0% 20.6%
4952364 1.1.7.28 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel 0.71 57.0 5.70e-01 97.6% 84.7%
4037438 1.1.7.56 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Arabinose_Iso_C 0.70 62.0 4.90e-01 98.8% 63.8%
1678098 1.1.7.56 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Arabinose_Iso_C 0.70 61.0 4.86e-01 97.6% 65.1%
4176129 1.1.7.56 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Arabinose_Iso_C 0.68 60.0 4.78e-01 98.8% 64.4%
3187444 1.1.7.81 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SEN1_barrel 0.68 61.0 5.52e-01 100.0% 80.0%
4989873 1.1.7.28 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel 0.67 60.0 5.36e-01 100.0% 87.5%
3988859 1.1.7.91 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25940 0.67 60.0 5.61e-01 100.0% 80.0%
4936008 1.1.7.28 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel 0.66 57.0 5.51e-01 97.6% 84.2%
4978132 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.66 59.0 5.18e-01 100.0% 88.0%
3299946 1.1.7.81 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SEN1_barrel 0.66 59.0 5.28e-01 98.8% 76.5%
5039871 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.65 50.0 3.52e-01 82.1% 26.9%
3349972 1.1.7.55 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › DUF6469 0.65 58.0 5.04e-01 100.0% 76.2%
4971776 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.65 56.0 4.89e-01 98.8% 75.2%
3688095 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.65 57.0 5.11e-01 100.0% 85.0%
3836393 9.2.1.2 ↗ beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › Vac_ImportDeg 0.64 52.0 4.00e-01 89.3% 91.4%
4319057 1.1.5.25 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.64 51.0 4.58e-01 85.7% 63.5%
2137681 1.1.5.25 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.63 51.0 4.70e-01 88.1% 68.8%
3632407 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 54.0 4.88e-01 95.2% 83.8%
3464137 4.1.1.152 ↗ beta barrels › SH3 › SH3 › SH3 › DUF1262 0.63 53.0 4.30e-01 94.0% 92.7%
3334322 4.25.1.1 ↗ beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › Auxin_resp 0.63 52.0 5.44e-01 92.9% 100.0%
3744112 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.63 55.0 5.10e-01 100.0% 76.4%
5065295 1.1.5.17 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N 0.62 51.0 4.13e-01 89.3% 67.5%
4872941 10.2.1.43 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Calici_coat_C 0.61 52.0 4.73e-01 97.6% 77.3%
3736128 868.1.1.8 ↗ a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › SLS1_C 0.61 46.0 3.25e-01 79.8% 53.1%
3472188 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.61 44.0 2.86e-01 76.2% 29.1%
5043373 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.60 39.0 3.45e-01 81.0% 45.8%
3423505 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.60 49.0 4.75e-01 96.4% 77.9%
3394788 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.60 50.0 3.68e-01 94.0% 42.9%
3546733 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.60 52.0 3.73e-01 96.4% 42.8%
3775096 382.1.1.2 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › Toxin_TOLIP 0.59 35.0 3.46e-01 81.0% 54.4%
861 9.3.1.3 ↗ beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Eryth_link_C 0.59 45.0 4.04e-01 85.7% 99.2%
4969376 4.1.1.30 ↗ beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.59 47.0 4.18e-01 85.7% 83.9%
3857291 206.1.1.13 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Alpha_kinase 0.59 46.0 3.27e-01 84.5% 46.7%
4929404 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.58 51.0 4.79e-01 100.0% 81.9%
3392487 223.1.1.2 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.58 44.0 3.79e-01 82.1% 84.3%
5062749 4.1.1.30 ↗ beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.58 45.0 4.10e-01 83.3% 81.6%
3878495 633.23.1.1 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › PMP22_Claudin 0.58 44.0 3.19e-01 79.8% 68.8%
3220081 304.102.1.7 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › Pus10_C 0.58 48.0 3.51e-01 96.4% 33.6%
3925069 4.1.1.319 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Hsr9 0.58 48.0 4.13e-01 94.0% 94.3%
3320319 4.1.1.152 ↗ beta barrels › SH3 › SH3 › SH3 › DUF1262 0.57 48.0 4.10e-01 92.9% 88.6%
3450207 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 49.0 4.62e-01 100.0% 77.9%
4607738 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.57 47.0 4.39e-01 95.2% 71.8%
4943531 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.57 41.0 3.71e-01 77.4% 89.2%
3545090 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.57 49.0 3.65e-01 96.4% 37.7%
5031423 212.1.1.0 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.57 42.0 3.60e-01 78.6% 83.7%
3631731 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 47.0 3.90e-01 91.7% 62.7%
3899014 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.56 48.0 3.59e-01 96.4% 44.0%
4674170 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.56 46.0 4.16e-01 95.2% 65.0%
3592093 304.102.1.7 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › Pus10_C 0.56 47.0 3.45e-01 97.6% 35.4%
3434219 4.25.1.2 ↗ beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › BRWD_AD 0.55 48.0 4.64e-01 97.6% 89.5%
4447762 9.1.1.12 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › THAP4_heme-bd 0.55 43.0 3.57e-01 88.1% 95.6%
147797 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.54 37.0 4.09e-01 81.0% 88.2%
3894561 221.1.2.16 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › MTRES1_C 0.54 41.0 3.87e-01 79.8% 96.0%
3813872 5.1.4.550 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 0.54 40.0 2.75e-01 79.8% 99.3%
4030168 206.1.1.71 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Kdo 0.54 40.0 2.51e-01 78.6% 33.8%
4063634 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.53 45.0 4.00e-01 95.2% 65.3%
4379531 223.1.1.41 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › HisK_sensor 0.53 39.0 3.05e-01 81.0% 41.5%
4400596 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.53 44.0 3.66e-01 95.2% 50.6%
3929299 1116.1.1.2 ↗ a+b two layers › Polycystin-mucolipin domain › Polycystin-mucolipin domain › Polycystin-mucolipin domain › MCLN_ECD 0.52 44.0 3.31e-01 96.4% 54.3%
4353676 223.1.1.41 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › HisK_sensor 0.52 39.0 3.38e-01 81.0% 60.0%
3771406 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 38.0 3.40e-01 79.8% 82.4%
3315951 220.1.1.86 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › ZGRF1-like_N 0.52 38.0 3.93e-01 81.0% 100.0%
5023597 219.1.1.13 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.51 36.0 2.91e-01 75.0% 38.1%
3586284 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.51 42.0 4.30e-01 92.9% 96.2%
3706101 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 41.0 3.13e-01 89.3% 42.4%
3243256 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 39.0 3.17e-01 86.9% 40.6%
3530927 109.4.1.383 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PI3K_1B_p101 0.51 38.0 2.97e-01 81.0% 93.3%
3974873 219.1.1.35 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › SpvD 0.50 44.0 3.35e-01 98.8% 41.4%
3600139 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.50 45.0 4.14e-01 100.0% 84.5%
3538619 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.50 37.0 3.31e-01 81.0% 72.3%
D8 medium residues 1441-1512
PDB
D9 medium residues 1513-1697
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2odlA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.93 91.0 6.92e-01 100.0% 82.8%
4i84A00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.92 88.0 7.24e-01 98.4% 88.9%
3riqA00 2.160.20.20 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.86 82.0 5.69e-01 100.0% 62.7%
3p4gD00 2.160.20.160 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.86 81.0 6.67e-01 100.0% 69.6%
1ee6A00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.85 69.0 6.78e-01 83.8% 100.0%
1dabA00 2.160.20.20 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.85 80.0 5.59e-01 100.0% 58.3%
7dmkA02 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.84 80.0 6.66e-01 100.0% 91.3%
4pmhA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.78 71.0 5.59e-01 96.8% 89.1%
1gq8A00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.78 71.0 5.90e-01 98.4% 83.6%
4kh3A00 2.160.20.20 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.77 71.0 5.16e-01 100.0% 47.2%
3lycA00 2.160.20.120 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.76 72.0 6.50e-01 100.0% 92.5%
3b4nA02 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.71 65.0 6.03e-01 96.8% 99.1%
2b0rB00 2.160.20.70 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.68 50.0 5.38e-01 84.3% 88.0%
1k4zA00 2.160.20.70 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.64 52.0 5.59e-01 95.7% 100.0%
1k8fA00 2.160.20.70 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.64 51.0 5.53e-01 96.2% 100.0%
3bh7B01 2.160.20.70 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.63 54.0 5.35e-01 90.8% 100.0%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3618317 207.14.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A 0.92 89.0 8.32e-01 100.0% 89.5%
4951076 208.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.90 65.0 7.61e-01 90.3% 100.0%
5017838 208.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.90 71.0 7.90e-01 86.5% 100.0%
4026564 208.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.87 79.0 7.75e-01 100.0% 89.7%
3606135 207.2.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.86 76.0 6.37e-01 93.0% 99.0%
3560250 208.2.1.7 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain › Epiglycanin_TR 0.85 65.0 7.31e-01 98.4% 100.0%
5048136 207.6.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C 0.83 80.0 7.16e-01 100.0% 76.7%
5078879 208.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.83 80.0 7.78e-01 100.0% 94.0%
3884895 207.6.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C 0.82 78.0 7.30e-01 100.0% 91.8%
4463206 208.1.1.45 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Bactofilin 0.82 76.0 6.97e-01 100.0% 77.4%
3611300 207.2.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.82 77.0 5.24e-01 100.0% 31.9%
3937756 207.6.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C 0.82 77.0 6.99e-01 100.0% 77.4%
3758283 207.6.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C 0.81 64.0 6.64e-01 82.7% 100.0%
3707472 207.6.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C 0.80 68.0 6.14e-01 100.0% 67.9%
4534896 207.2.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.80 74.0 6.67e-01 100.0% 83.6%
3832702 207.2.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.79 74.0 5.60e-01 100.0% 56.3%
3254394 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.78 63.0 4.37e-01 93.0% 26.7%
3247715 207.6.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C 0.78 73.0 6.22e-01 100.0% 65.2%
3707216 208.2.1.0 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain 0.78 72.0 6.70e-01 100.0% 80.0%
3716648 207.2.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.78 74.0 5.38e-01 100.0% 41.8%
3223981 207.6.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C 0.77 73.0 5.86e-01 100.0% 57.3%
3254891 207.6.1.8 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C › Nucleoporin_FG 0.77 52.0 6.01e-01 78.9% 94.1%
3666410 207.9.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats 0.76 65.0 6.81e-01 100.0% 99.4%
3596944 208.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.76 56.0 6.07e-01 98.9% 89.7%
3513692 207.6.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C 0.75 72.0 5.94e-01 100.0% 65.2%
3855439 207.8.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Stabilizer of iron transporter sufD › Stabilizer of iron transporter sufD 0.75 63.0 5.36e-01 87.0% 84.6%
3605595 207.6.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C 0.74 52.0 5.28e-01 100.0% 73.3%
3517885 207.14.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A 0.74 54.0 5.50e-01 89.7% 76.7%
3838482 207.2.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.73 65.0 5.62e-01 93.5% 96.7%
3422947 207.8.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Stabilizer of iron transporter sufD › Stabilizer of iron transporter sufD › SUFBD 0.73 65.0 4.88e-01 94.1% 70.2%
3857700 207.6.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C 0.73 67.0 5.96e-01 100.0% 71.5%
5078382 207.8.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Stabilizer of iron transporter sufD › Stabilizer of iron transporter sufD › SUFBD 0.73 65.0 5.45e-01 95.1% 86.2%
3165270 207.2.1.10 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pertactin 0.72 67.0 5.91e-01 100.0% 92.7%
5026189 207.8.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Stabilizer of iron transporter sufD › Stabilizer of iron transporter sufD › SUFBD 0.72 64.0 4.93e-01 94.6% 74.9%
4119211 207.7.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Alpha subunit of glutamate synthase-C › Alpha subunit of glutamate synthase-C › GXGXG 0.71 65.0 6.24e-01 98.4% 99.5%
5022985 207.7.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Alpha subunit of glutamate synthase-C › Alpha subunit of glutamate synthase-C › GXGXG 0.71 66.0 6.20e-01 100.0% 96.4%
4969675 207.7.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Alpha subunit of glutamate synthase-C › Alpha subunit of glutamate synthase-C › GXGXG 0.70 65.0 6.17e-01 100.0% 97.7%
4990150 207.8.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Stabilizer of iron transporter sufD › Stabilizer of iron transporter sufD › SUFBD 0.70 63.0 4.98e-01 96.2% 72.4%
4976134 207.8.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Stabilizer of iron transporter sufD › Stabilizer of iron transporter sufD › SUFBD 0.70 65.0 5.41e-01 100.0% 90.5%
5061677 207.7.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Alpha subunit of glutamate synthase-C › Alpha subunit of glutamate synthase-C › GXGXG 0.70 63.0 6.08e-01 97.3% 97.1%
4982160 207.7.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Alpha subunit of glutamate synthase-C › Alpha subunit of glutamate synthase-C › GXGXG 0.69 62.0 6.10e-01 96.2% 98.5%
5068836 207.7.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Alpha subunit of glutamate synthase-C › Alpha subunit of glutamate synthase-C › GXGXG 0.69 63.0 5.94e-01 97.8% 95.5%
5010532 207.8.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Stabilizer of iron transporter sufD › Stabilizer of iron transporter sufD › SUFBD 0.69 60.0 4.74e-01 93.0% 72.8%
4567319 207.8.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Stabilizer of iron transporter sufD › Stabilizer of iron transporter sufD › SUFBD 0.69 63.0 4.78e-01 100.0% 83.7%
3869345 207.6.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C 0.68 57.0 5.31e-01 87.6% 96.0%
5058080 207.8.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Stabilizer of iron transporter sufD › Stabilizer of iron transporter sufD › SUFBD 0.68 63.0 4.88e-01 99.5% 83.5%
3686362 207.2.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 0.67 60.0 5.29e-01 94.1% 100.0%
3246091 389.1.1.157 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › Epiglycanin_TR 0.64 45.0 4.60e-01 71.9% 98.3%