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NC_042351.1__YP_009639473.1__FGG67_gp07__00007

Bact-Vir

NC_042351.1__YP_009639473.1__FGG67_gp07__00007

Identity

Accession:
NC_042351 ↗
Kingdom:
phage

Quality

73.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-68
PDB
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3dfeA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.73 58.0 5.37e-01 87.5% 100.0%
3ramA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.66 49.0 4.04e-01 79.7% 92.4%
2kl8A00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.66 48.0 4.44e-01 78.1% 91.8%
3p96A02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.66 47.0 4.41e-01 78.1% 95.2%
2qz8A02 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.65 49.0 4.58e-01 81.2% 96.3%
3egrA00 3.10.20.520 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phenylacetic acid degradation B 0.65 48.0 4.88e-01 79.7% 85.7%
3mpcA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 46.0 4.06e-01 82.8% 51.0%
3o1lB01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.63 47.0 4.35e-01 84.4% 97.7%
5is2A01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.63 47.0 4.27e-01 82.8% 93.4%
1s7iA00 3.30.70.1060 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel 0.62 51.0 4.20e-01 93.8% 97.6%
1u8sA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.62 47.0 4.39e-01 84.4% 100.0%
2nyiA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.62 47.0 4.25e-01 82.8% 97.8%
2h5eA03 3.30.70.3280 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptide chain release factor 3, domain III 0.62 50.0 3.97e-01 90.6% 85.4%
4ewtA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 48.0 4.00e-01 84.4% 99.1%
2db8A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 44.0 3.72e-01 85.9% 43.6%
2wadA02 3.90.1310.10 Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) 0.62 43.0 3.35e-01 82.8% 31.8%
1y6kR01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 47.0 4.09e-01 89.1% 53.9%
1u8sA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.61 46.0 4.27e-01 85.9% 97.7%
3mgjA00 3.30.70.2690 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › LOR/SDH bifunctional enzyme, conserved domain 0.61 48.0 4.29e-01 90.6% 100.0%
1es6A02 2.60.510.10 Mainly Beta › Sandwich › EV matrix protein fold › EV matrix protein 0.61 46.0 4.05e-01 84.4% 100.0%
1t4aA00 3.30.1280.10 Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS 0.60 43.0 4.10e-01 78.1% 100.0%
1dyqA02 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.60 43.0 3.36e-01 76.6% 69.7%
2hw4A01 3.50.20.20 Alpha Beta › 3-Layer(bba) Sandwich › Pyruvoyl-Dependent Histidine Decarboxylase; Chain B › Janus/Ocnus 0.60 49.0 4.16e-01 92.2% 53.6%
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.60 43.0 4.34e-01 85.9% 77.3%
3s98A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 43.0 4.04e-01 84.4% 61.0%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.59 43.0 3.89e-01 79.7% 56.5%
1s7hA01 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 46.0 4.28e-01 84.4% 100.0%
5e53A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 45.0 4.04e-01 85.9% 58.1%
3nd1A02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.59 43.0 3.60e-01 81.2% 45.5%
2r6fA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.58 41.0 4.00e-01 79.7% 66.7%
2eddA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 41.0 3.56e-01 90.6% 44.6%
2ebfX01 3.10.670.10 Alpha Beta › Roll › Secreted effector protein ssei fold › Secreted effector protein ssei. 0.58 45.0 3.29e-01 87.5% 42.5%
1bquA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 44.0 3.76e-01 84.4% 49.1%
1zpwX00 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 43.0 4.07e-01 84.4% 98.8%
2zcwA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 39.0 3.31e-01 79.7% 40.2%
2pqqA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 39.0 3.01e-01 79.7% 31.3%
4ev0D01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 39.0 3.08e-01 79.7% 33.6%
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.56 43.0 4.13e-01 87.5% 80.3%
2npnA02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.55 41.0 3.54e-01 84.4% 47.7%
4il7A00 2.60.120.1300 Mainly Beta › Sandwich › Jelly Rolls › 0.55 41.0 3.79e-01 81.2% 76.5%
3o2sB01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.55 44.0 3.48e-01 87.5% 49.3%
1m0wA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.55 44.0 3.77e-01 93.8% 53.7%
7pwfD02 3.30.1140.32 Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Ribosomal protein S3, C-terminal domain 0.55 39.0 3.55e-01 76.6% 87.6%
7qh7701 3.30.980.10 Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › Threonyl-trna Synthetase; Chain A, domain 2 0.53 37.0 2.77e-01 76.6% 75.9%
3rgzA02 3.30.1490.310 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.51 40.0 4.09e-01 92.2% 96.7%
1x0cA01 2.60.350.10 Mainly Beta › Sandwich › Dex49a from penicillium minioluteum complex, domain 1 › Dextranase, N-terminal 0.51 37.0 2.88e-01 82.8% 46.2%
3uoxB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 38.0 2.47e-01 81.2% 90.5%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3972855 304.14.1.1 a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR 0.78 60.0 5.70e-01 81.2% 100.0%
4048407 304.14.1.0 a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) 0.77 59.0 5.46e-01 81.2% 97.5%
3976762 304.14.1.1 a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR 0.75 56.0 5.27e-01 78.1% 98.7%
4375028 264.2.1.0 beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.74 58.0 4.64e-01 84.4% 99.2%
4964337 3115.5.1.1 a+b two layers › GP2-like › phenylacetate-CoA oxygenase subunit PaaB › phenylacetate-CoA oxygenase subunit PaaB › PaaB 0.71 52.0 5.54e-01 79.7% 94.5%
4597889 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.69 55.0 4.90e-01 89.1% 100.0%
4968756 304.128.1.0 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB 0.68 51.0 4.64e-01 79.7% 95.3%
5079520 304.128.1.0 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB 0.67 52.0 4.65e-01 84.4% 86.7%
2028252 3986.2.1.1 a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd › Dmd 0.66 49.0 4.92e-01 79.7% 79.7%
5072924 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.66 53.0 4.17e-01 89.1% 99.3%
3790957 3562.1.1.21 alpha bundles › Calcium release-activated calcium channel protein 1 › Calcium release-activated calcium channel protein 1 › Calcium release-activated calcium channel protein 1 › NRF 0.66 51.0 3.78e-01 87.5% 36.1%
4962335 3115.5.1.1 a+b two layers › GP2-like › phenylacetate-CoA oxygenase subunit PaaB › phenylacetate-CoA oxygenase subunit PaaB › PaaB 0.65 48.0 4.84e-01 79.7% 83.1%
199962 3115.5.1.1 a+b two layers › GP2-like › phenylacetate-CoA oxygenase subunit PaaB › phenylacetate-CoA oxygenase subunit PaaB › PaaB 0.65 48.0 4.88e-01 79.7% 85.7%
3943250 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.63 48.0 4.04e-01 84.4% 99.1%
3620456 221.1.1.64 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Formin_GBD_N 0.63 48.0 4.07e-01 87.5% 49.1%
3842874 221.1.1.6 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.62 49.0 4.17e-01 87.5% 52.4%
3173339 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.62 47.0 4.31e-01 82.8% 96.5%
5250 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.62 47.0 4.40e-01 85.9% 100.0%
3600134 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.62 45.0 3.96e-01 82.8% 51.0%
5027594 2003.1.2.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.61 51.0 3.30e-01 100.0% 35.4%
3715195 2007.2.2.0 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Phosphotyrosine protein phosphatases I-like 0.60 47.0 3.21e-01 85.9% 55.0%
5080205 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.60 43.0 4.63e-01 82.8% 100.0%
3177894 10.41.1.1 beta sandwiches › jelly-roll › Protein Hikeshi jelly-roll domain › Protein Hikeshi jelly-roll domain › Hikeshi-like_N 0.60 47.0 3.81e-01 85.9% 45.0%
4234778 304.8.1.9 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_6 0.59 43.0 3.95e-01 79.7% 91.0%
5070107 304.56.1.0 a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like 0.59 43.0 4.21e-01 78.1% 100.0%
3583600 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.59 47.0 4.39e-01 87.5% 95.0%
5069565 304.26.1.0 a+b two layers › Alpha-beta plaits › MTH1187/YkoF-like › MTH1187/YkoF-like 0.59 48.0 4.31e-01 92.2% 96.8%
4433786 382.1.1.1 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › UPAR_LY6 0.57 44.0 4.12e-01 87.5% 92.9%
3282383 10.12.1.1 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.57 40.0 3.12e-01 81.2% 33.6%
3568179 11.1.1.3 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig 0.57 43.0 3.55e-01 82.8% 44.2%
4030602 10.12.1.1 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.56 38.0 2.50e-01 79.7% 14.4%
3664975 207.1.1.323 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1, LRRNT_2, LRR_6, LRR_8, Island 0.56 43.0 2.45e-01 89.1% 7.1%
4967222 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.56 42.0 4.32e-01 84.4% 91.7%
4067396 10.12.1.1 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.56 38.0 3.06e-01 79.7% 32.9%
4969863 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.55 42.0 4.06e-01 85.9% 77.3%
3460588 207.1.1.35 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1,LRR_8,Island 0.55 42.0 2.84e-01 89.1% 19.3%
4013514 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.55 41.0 3.67e-01 87.5% 58.1%
4943472 3662.1.1.0 a+b two layers › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related 0.55 39.0 3.36e-01 75.0% 66.7%
3664713 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.55 43.0 2.49e-01 90.6% 19.6%
4983643 302.4.1.1 a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › Hydant_A_C 0.54 43.0 3.84e-01 95.3% 73.3%
5067865 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.54 40.0 3.97e-01 85.9% 85.7%
5005349 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 38.0 2.35e-01 84.4% 10.5%
5039449 302.4.1.0 a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit 0.54 44.0 3.88e-01 98.4% 62.9%
3622256 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.54 42.0 3.30e-01 90.6% 41.9%
4029586 10.32.1.203 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin 0.54 41.0 3.30e-01 89.1% 76.0%
None 0.53 39.0 2.39e-01 79.7% 14.6%
1117634 264.1.1.8 beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS,AKAP7_RIRII_bdg 0.53 47.0 3.17e-01 98.4% 91.3%
4008166 3115.1.1.10 a+b two layers › GP2-like › RplX-like › RplX-like › PF27430 0.53 39.0 3.58e-01 85.9% 67.4%
3453549 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.53 41.0 3.56e-01 92.2% 53.9%
5018298 302.4.1.0 a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit 0.52 43.0 3.69e-01 100.0% 96.5%
3603767 302.4.1.0 a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit 0.52 43.0 3.80e-01 100.0% 99.0%
3748734 11.1.1.99 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.52 39.0 3.25e-01 85.9% 53.8%
3825952 221.1.1.4 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 0.52 39.0 3.45e-01 90.6% 52.4%
3231885 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.50 39.0 3.27e-01 90.6% 66.4%
3184963 1.1.1.27 beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp, TAXi_N 0.50 36.0 2.30e-01 78.1% 20.0%