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NC_042351.1__YP_009639480.1__FGG67_gp14__00014

Bact-Vir

NC_042351.1__YP_009639480.1__FGG67_gp14__00014

Identity

Accession:
NC_042351 ↗
Kingdom:
phage

Quality

86.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Kryptosalinivirus› Salinibacter_phage_M8CRM-1

TaxID: 2681612

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 25-124
PDB
Domain cluster: rep: qs_7_scaffold_0_curated_closed_complete_prodigal-single.1__X__X__00021__D22-114
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ebkB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.79 66.0 5.53e-01 89.0% 62.8%
2cm4A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.73 59.0 5.23e-01 88.0% 66.9%
1epaA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.72 64.0 5.42e-01 96.0% 93.8%
4azpA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.71 59.0 5.32e-01 88.0% 94.8%
1vyfA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.70 58.0 5.21e-01 88.0% 94.8%
1lf7A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.70 63.0 5.32e-01 99.0% 85.4%
1xkiA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.69 56.0 5.19e-01 87.0% 74.2%
1p6pA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.69 57.0 5.25e-01 87.0% 97.6%
3brnB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.69 59.0 5.20e-01 94.0% 89.9%
1lfoA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.69 56.0 5.18e-01 87.0% 96.9%
1lkeA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.68 55.0 4.78e-01 88.0% 68.2%
3l4rA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.68 55.0 4.79e-01 87.0% 71.5%
6c1zA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.68 55.0 4.93e-01 87.0% 93.5%
4jglA00 2.40.128.530 Mainly Beta › Beta Barrel › Lipocalin › 0.67 60.0 5.23e-01 100.0% 89.5%
1z24A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.66 59.0 4.82e-01 100.0% 82.5%
2rcqA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.66 54.0 4.84e-01 90.0% 93.6%
3htyA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.65 53.0 5.53e-01 88.0% 94.7%
1ew3A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.64 56.0 4.84e-01 97.0% 93.1%
2o62A02 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.64 52.0 4.68e-01 88.0% 92.0%
1dzkA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.63 55.0 4.82e-01 95.0% 97.3%
1pbyA02 2.40.128.120 Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 0.62 50.0 4.99e-01 89.0% 93.4%
2wjsA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.61 50.0 4.14e-01 88.0% 82.3%
2wjsA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.61 50.0 4.07e-01 88.0% 75.4%
3h1qA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.60 47.0 4.11e-01 83.0% 80.4%
2lfuA02 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.60 48.0 4.47e-01 89.0% 86.0%
5mc9A02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.59 49.0 3.99e-01 88.0% 76.4%
1bebA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 51.0 4.50e-01 98.0% 92.9%
3t0pA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.59 48.0 4.07e-01 89.0% 87.8%
1jmxB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 47.0 3.24e-01 85.0% 41.0%
1mdcA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 46.0 4.24e-01 85.0% 98.5%
1z94B00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.59 46.0 4.12e-01 85.0% 96.5%
1sxjH01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.58 44.0 4.16e-01 81.0% 86.3%
1fx5B00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.58 48.0 3.57e-01 87.0% 69.9%
1dhkB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.58 47.0 3.77e-01 87.0% 67.2%
1rwzA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.58 47.0 3.59e-01 89.0% 90.6%
5z5dA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.58 48.0 3.81e-01 89.0% 69.3%
1u7bA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.57 46.0 3.52e-01 89.0% 91.2%
7r8iA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.57 47.0 3.67e-01 90.0% 97.2%
2durB01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 47.0 3.55e-01 89.0% 72.1%
4csdB00 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.55 45.0 3.40e-01 91.0% 99.3%
2jkbA02 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.55 44.0 3.00e-01 85.0% 45.0%
2l8oA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 42.0 3.79e-01 83.0% 74.3%
2oqbA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 44.0 4.30e-01 85.0% 86.1%
3mswA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.55 40.0 3.55e-01 100.0% 54.7%
1pzdA01 2.60.40.1480 Mainly Beta › Sandwich › Immunoglobulin-like › Coatomer, gamma subunit, appendage domain 0.54 43.0 3.66e-01 84.0% 82.1%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 25.0 3.37e-01 88.0% 89.4%
2bs6A01 2.40.128.190 Mainly Beta › Beta Barrel › Lipocalin › 0.53 38.0 4.11e-01 77.0% 88.1%
4r80A00 3.10.450.630 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 33.0 3.71e-01 77.0% 85.5%
ECOD (67)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4998507 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.80 43.0 5.82e-01 79.0% 100.0%
1292982 9.1.1.5 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Triabin 0.79 66.0 5.42e-01 89.0% 59.2%
4083857 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.74 61.0 5.45e-01 89.0% 94.3%
4139943 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.71 62.0 5.34e-01 95.0% 92.3%
3624142 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.70 58.0 5.13e-01 88.0% 94.3%
3931011 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.70 58.0 5.32e-01 90.0% 93.8%
4262684 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.69 64.0 5.19e-01 100.0% 85.0%
3894256 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.69 62.0 5.25e-01 99.0% 88.5%
3415592 241.15.1.2 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › PI31_Prot_N 0.69 40.0 3.47e-01 77.0% 38.7%
3763572 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.69 60.0 5.16e-01 95.0% 88.4%
3748074 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.67 56.0 4.84e-01 93.0% 91.3%
3474457 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.66 40.0 4.10e-01 81.0% 63.2%
846 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.66 59.0 4.82e-01 100.0% 82.5%
3745663 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.66 59.0 4.92e-01 99.0% 83.2%
3408648 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 46.0 4.61e-01 72.0% 94.0%
3496817 3369.1.1.1 ↗ beta meanders › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › Lamp2-like_luminal 0.65 45.0 3.85e-01 72.0% 63.7%
3970395 4252.1.1.10 ↗ beta barrels › AttH-like › AttH-like › AttH-like › DUF2804 0.63 51.0 4.03e-01 87.0% 72.4%
3179717 9.14.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Uncharacterized protein YLR301W › Uncharacterized protein YLR301W 0.63 51.0 4.85e-01 88.0% 99.2%
857 9.3.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Qn_am_d_aII 0.62 51.0 5.00e-01 89.0% 91.7%
3286735 243.3.1.3 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.62 40.0 4.28e-01 86.0% 76.5%
5017958 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.62 51.0 4.45e-01 90.0% 79.3%
3315619 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.61 47.0 3.24e-01 80.0% 45.1%
3793797 5.1.5.93 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_EMC1_N 0.61 45.0 3.17e-01 78.0% 36.6%
4012990 241.15.1.2 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › PI31_Prot_N 0.60 44.0 3.60e-01 76.0% 50.3%
5065385 4252.1.1.12 ↗ beta barrels › AttH-like › AttH-like › AttH-like › DUF7064 0.60 49.0 4.17e-01 88.0% 84.2%
5039218 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.60 46.0 4.22e-01 81.0% 83.8%
3944143 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.60 44.0 3.79e-01 77.0% 72.5%
3204975 241.15.1.2 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › PI31_Prot_N 0.60 44.0 3.68e-01 76.0% 49.7%
3261490 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.59 49.0 3.87e-01 88.0% 70.0%
3242795 4252.1.1.0 ↗ beta barrels › AttH-like › AttH-like › AttH-like 0.59 48.0 3.98e-01 88.0% 91.1%
4945471 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 36.0 4.27e-01 82.0% 93.8%
3928295 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.59 45.0 3.55e-01 81.0% 60.0%
3261967 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.58 49.0 3.70e-01 89.0% 74.2%
3678427 5.1.4.379 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, WD40_2 0.58 46.0 3.31e-01 86.0% 75.7%
4986209 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 47.0 4.39e-01 86.0% 72.6%
3438374 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.58 46.0 3.08e-01 83.0% 65.6%
3475877 241.15.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.58 42.0 3.67e-01 76.0% 50.7%
3421076 5.1.3.142 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.58 44.0 3.13e-01 81.0% 37.0%
3190424 10.1.1.49 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_59_C 0.58 49.0 3.97e-01 90.0% 72.2%
3564215 71.1.1.14 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › GPCR_chapero_1 0.58 53.0 4.02e-01 99.0% 78.9%
4939191 10.1.1.64 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › DUF2341 0.58 50.0 3.55e-01 93.0% 46.2%
3729278 10.1.1.41 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › GH43_C2 0.58 47.0 3.79e-01 87.0% 71.3%
None — 0.58 50.0 3.44e-01 94.0% 95.5%
3461718 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.58 45.0 3.39e-01 82.0% 93.0%
5037155 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 49.0 3.20e-01 94.0% 83.1%
4026443 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.57 46.0 3.91e-01 85.0% 87.7%
4029923 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.57 50.0 3.86e-01 97.0% 67.1%
4346133 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.56 47.0 4.25e-01 94.0% 95.8%
3281522 10.1.1.16 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Peptidase_A4 0.56 47.0 3.65e-01 88.0% 74.6%
3508197 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 47.0 3.26e-01 91.0% 91.0%
4003103 4026.1.1.0 ↗ a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) 0.56 49.0 4.33e-01 99.0% 66.9%
4544568 719.1.1.5 ↗ beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › PF27933 0.55 51.0 4.94e-01 98.0% 100.0%
3510850 3459.1.1.0 ↗ beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule 0.55 43.0 4.49e-01 81.0% 98.9%
4027822 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.55 43.0 3.36e-01 83.0% 75.2%
3336515 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.55 43.0 3.09e-01 86.0% 81.0%
3550970 719.1.1.5 ↗ beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › PF27933 0.55 50.0 4.87e-01 98.0% 100.0%
5080576 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.54 44.0 3.51e-01 88.0% 74.0%
5033737 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.54 44.0 3.60e-01 88.0% 82.4%
2799093 5084.5.1.3 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_3 0.54 36.0 2.56e-01 100.0% 23.5%
3288669 331.3.1.27 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF2505 0.53 42.0 3.62e-01 86.0% 95.6%
3536769 5.1.4.57 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PALB2_WD40 0.52 44.0 3.03e-01 94.0% 84.3%
3629205 5.1.4.147 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RMC1_N 0.51 44.0 3.03e-01 95.0% 90.0%
3882269 220.1.1.25 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › CARM1 0.51 41.0 4.04e-01 85.0% 90.5%
3391867 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 40.0 3.64e-01 88.0% 63.7%
3264341 5.1.4.147 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RMC1_N 0.50 43.0 3.04e-01 95.0% 91.1%
3403394 3369.1.1.1 ↗ beta meanders › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › Lamp2-like_luminal 0.50 39.0 3.42e-01 88.0% 88.8%
3630390 5.1.4.271 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, PF30361 0.50 43.0 3.01e-01 97.0% 94.7%