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NC_042351.1__YP_009639505.1__FGG67_gp39__00039

Bact-Vir

NC_042351.1__YP_009639505.1__FGG67_gp39__00039

Identity

Accession:
NC_042351 ↗
Kingdom:
phage

Quality

83.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Kryptosalinivirus› Salinibacter_phage_M8CRM-1

TaxID: 2681612

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-233
PDB
Domain cluster: rep: ON548425__URC16917.1__X__00163__D1-172
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5of3A00 3.90.920.10 Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain 0.74 62.0 5.49e-01 86.5% 77.7%
4bpuC00 3.90.920.10 Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain 0.73 65.0 5.48e-01 93.4% 91.3%
1g71A01 3.90.920.10 Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain 0.73 59.0 5.89e-01 86.0% 80.9%
2faoA01 3.90.920.10 Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain 0.69 63.0 5.85e-01 96.1% 89.7%
1z1dB00 3.40.1310.20 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.66 36.0 4.59e-01 86.0% 90.8%
4mt1A02 3.30.70.1430 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain 0.64 30.0 4.43e-01 77.3% 100.0%
5t0oA02 3.30.70.1430 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain 0.63 30.0 4.39e-01 76.9% 100.0%
1vk8A00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 26.0 3.95e-01 91.7% 94.6%
3gz7B00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 27.0 3.96e-01 90.8% 99.0%
1f08B00 3.40.1310.10 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.57 32.0 3.94e-01 74.7% 85.5%
1lq9A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 27.0 3.78e-01 78.2% 96.4%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5081312 862.1.1.0 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain 0.83 77.0 7.93e-01 99.1% 100.0%
4441734 862.1.1.0 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain 0.78 60.0 6.63e-01 97.8% 96.8%
4212379 862.1.1.0 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain 0.78 66.0 6.30e-01 86.0% 89.0%
4946939 862.1.1.1 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S 0.78 64.0 6.82e-01 84.3% 99.5%
4942021 862.1.1.5 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › LigD_Prim-Pol 0.77 72.0 6.70e-01 97.4% 87.6%
4973338 862.1.1.1 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S 0.77 64.0 5.90e-01 86.0% 90.9%
4956744 862.1.1.1 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S 0.77 64.0 6.13e-01 85.6% 91.4%
5045979 862.1.1.1 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S 0.77 64.0 5.98e-01 85.6% 92.2%
4085259 862.1.1.1 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S 0.77 64.0 6.02e-01 85.6% 91.7%
4552974 862.1.1.1 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S 0.76 64.0 6.32e-01 86.0% 91.7%
5060983 862.1.1.1 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S 0.76 63.0 5.83e-01 85.6% 87.4%
4426711 862.1.1.1 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S 0.76 64.0 6.13e-01 86.0% 80.8%
5044094 862.1.1.1 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S 0.76 63.0 6.34e-01 85.2% 87.8%
5058297 862.1.1.1 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S 0.76 71.0 6.55e-01 96.9% 93.2%
5030283 862.1.1.0 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain 0.76 71.0 6.59e-01 96.9% 88.4%
4978273 862.1.1.1 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S 0.76 64.0 6.05e-01 86.5% 90.9%
4937156 862.1.1.5 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › LigD_Prim-Pol 0.76 71.0 6.58e-01 97.8% 88.2%
4425840 862.1.1.1 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S 0.76 63.0 5.59e-01 86.5% 92.8%
5026687 862.1.1.0 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain 0.75 70.0 6.55e-01 97.4% 90.2%
5051647 862.1.1.1 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S 0.75 63.0 6.25e-01 86.5% 88.7%
5069642 862.1.1.1 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S 0.75 62.0 6.40e-01 85.2% 89.1%
4983703 862.1.1.0 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain 0.74 70.0 6.65e-01 98.7% 94.3%
4955551 862.1.1.0 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain 0.74 69.0 6.78e-01 97.8% 93.9%
4984518 862.1.1.0 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain 0.74 69.0 6.51e-01 98.3% 91.5%
4554731 862.1.1.1 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S 0.74 62.0 6.25e-01 87.3% 90.0%
5010675 862.1.1.0 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain 0.73 61.0 5.87e-01 86.5% 92.3%
3604598 862.1.1.1 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S 0.73 67.0 6.24e-01 96.9% 92.1%
3278096 862.1.1.5 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › LigD_Prim-Pol 0.73 63.0 5.53e-01 90.0% 75.3%
2721360 862.1.1.0 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain 0.72 53.0 5.84e-01 97.8% 91.9%
None — 0.72 63.0 5.57e-01 90.0% 77.7%
5000831 862.1.1.5 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › LigD_Prim-Pol 0.71 65.0 6.09e-01 95.6% 93.8%
5004945 862.1.1.0 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain 0.71 60.0 5.75e-01 86.5% 84.3%
5065288 862.1.1.0 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain 0.71 58.0 5.49e-01 86.5% 85.5%
3959043 862.1.1.0 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain 0.70 65.0 5.69e-01 96.9% 77.8%
2711606 862.1.1.5 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › LigD_Prim-Pol 0.70 65.0 5.64e-01 96.9% 76.0%
4987159 862.1.1.5 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › LigD_Prim-Pol 0.69 64.0 6.11e-01 96.1% 86.9%
3284431 862.1.1.5 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › LigD_Prim-Pol 0.69 64.0 5.70e-01 97.4% 80.0%
4673704 862.1.1.0 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain 0.63 58.0 5.44e-01 98.7% 81.1%
4023284 304.6.1.3 ↗ a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE 0.54 36.0 3.48e-01 92.6% 57.0%
3608140 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.54 29.0 3.65e-01 76.9% 87.3%
1887045 304.6.1.3 ↗ a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE 0.51 36.0 3.44e-01 93.9% 60.7%
1711357 304.6.1.3 ↗ a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE 0.51 36.0 3.43e-01 93.4% 60.9%
3180053 304.6.1.3 ↗ a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE 0.50 34.0 3.36e-01 93.4% 61.2%
D2 high residues 255-339
PDB
Domain cluster: rep: NC_004735.1__NP_835592.1__Rm378p005__00005__D374-449
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF08708.17 best PriCT_1 23.5 4.70e-05 58.8% 59.7%