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NC_042353.1__YP_009639631.1__FGG69_gp19__00019

Bact-Vir

Identity

Accession:: NC_042353 ↗
Kingdom:: phage

Quality

76.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Kairosalinivirus› Salinibacter_phage_SRUTV-1

TaxID: 2684227

Cluster

View cluster (7 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 86-198

PDB

Domain cluster: rep: CG_2015-01t_scaffold_8_prodigal-single.1__X__X__00007__D124-172_195-234_274-295

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1owfA00	4.10.520.10	Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins	0.51	28.0	3.03e-01	92.0%	62.5%

ECOD (6)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1687168	2492.1.1.26 ↗	a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › MPN_2A_DUB_like	0.57	46.0	3.94e-01	87.6%	70.7%
3679339	2492.1.1.0 ↗	a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like	0.55	44.0	3.95e-01	87.6%	78.2%
3438031	2492.1.1.8 ↗	a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › UPF0172	0.54	44.0	3.61e-01	89.4%	59.8%
3378032	2492.1.1.2 ↗	a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB	0.53	44.0	3.71e-01	90.3%	66.7%
5081359	2492.1.1.2 ↗	a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB	0.52	45.0	3.96e-01	96.5%	65.9%
4857726	704.1.1.0 ↗	beta complex topology › Coronavirus RNA-binding domain (N-terminal part of Pfam 00937) › Coronavirus RNA-binding domain (N-terminal part of Pfam 00937) › Coronavirus RNA-binding domain (N-terminal part of Pfam 00937)	0.50	35.0	3.39e-01	87.6%	64.5%

D2 medium residues 386-453

PDB

Domain cluster: representative

CATH (10)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2zdiB00	1.10.287.370	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.67	46.0	3.89e-01	77.9%	45.3%
1fxkB00	1.10.287.370	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.64	44.0	3.76e-01	82.4%	45.0%
1vprA01	4.10.1300.10	Few Secondary Structures › Irregular › Luminescent protein fold › Dinoflagellate luciferase	0.60	41.0	3.50e-01	91.2%	43.6%
4xhpA01	3.30.420.40	Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain	0.59	42.0	3.11e-01	95.6%	29.6%
5y2vC01	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.54	46.0	4.25e-01	91.2%	75.3%
1fs7A01	1.10.1130.10	Mainly Alpha › Orthogonal Bundle › Flavocytochrome C3; Chain A, domain 2 › Flavocytochrome C3; Chain A	0.54	43.0	2.81e-01	89.7%	87.3%
3fxqB01	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.53	42.0	3.86e-01	85.3%	66.7%
3oqgA00	3.40.1440.50	Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease ›	0.53	41.0	3.11e-01	85.3%	51.1%
1lnwF01	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.51	42.0	3.46e-01	89.7%	64.5%
2fsjA02	3.30.420.40	Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain	0.50	37.0	2.90e-01	77.9%	42.0%

ECOD (12)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3482328	192.2.1.0 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin	0.69	47.0	4.02e-01	77.9%	45.7%
4112182	192.2.1.1 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2	0.64	44.0	3.61e-01	77.9%	40.7%
3345589	4016.1.1.1 ↗	alpha bundles › alpha-helical domain in type II DNA topoisomerase › alpha-helical domain in type II DNA topoisomerase › alpha-helical domain in type II DNA topoisomerase › DNA_topoisoIV	0.61	46.0	3.27e-01	79.4%	41.1%
3350669	502.1.1.1 ↗	a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C	0.61	45.0	4.53e-01	77.9%	97.1%
None	—		0.59	46.0	2.53e-01	82.4%	65.7%
4110236	3447.1.1.4 ↗	alpha bundles › Isoprenylcysteine carboxyl methyltransferase (ICMT) › Isoprenylcysteine carboxyl methyltransferase (ICMT) › Isoprenylcysteine carboxyl methyltransferase (ICMT) › PEMT	0.58	44.0	2.99e-01	91.2%	21.5%
3911250	2004.1.1.17 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Myosin_head	0.58	50.0	2.87e-01	94.1%	22.7%
3305844	4033.1.1.0 ↗	alpha arrays › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like	0.58	44.0	3.52e-01	83.8%	75.2%
3240388	5001.1.1.0 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like	0.55	49.0	3.20e-01	100.0%	63.4%
3717353	859.1.1.0 ↗	a+b two layers › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2	0.53	41.0	2.97e-01	82.4%	40.5%
4996700	2485.1.1.38 ↗	a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_3	0.51	38.0	3.40e-01	79.4%	100.0%
5042950	2003.1.2.10 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › GIDA	0.51	42.0	2.78e-01	98.5%	97.9%