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NC_042353.1__YP_009639634.1__FGG69_gp22__00022

Bact-Vir

NC_042353.1__YP_009639634.1__FGG69_gp22__00022

Identity

Accession:
NC_042353 ↗
Kingdom:
phage

Quality

72.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Kairosalinivirus› Salinibacter_phage_SRUTV-1

TaxID: 2684227

Cluster

View cluster (11 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-154_189-256
PDB
Domain cluster: rep: IMGVR_UViG_3300002123_000034-3300002123-C687J26634_1000024128__D6-251
Pfam (3)
AccessionNameScoreE-valueQ covHMM cov
PF00574.29 best CLP_protease 27.0 5.30e-06 71.0% 75.8%
PF01343.24 Peptidase_S49 42.9 6.90e-11 32.2% 40.9%
PF01343.24 Peptidase_S49 50.8 2.60e-13 24.3% 29.2%
D2 high residues 279-341
PDB
Domain cluster: rep: NC_048756.1__YP_009844620.1__HWC12_gp017__00017__D110-172
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF11160.14 best Hva1_TUDOR 32.6 9.50e-08 93.7% 81.4%
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.80 57.0 5.66e-01 100.0% 72.3%
1m1gB03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.77 56.0 5.70e-01 100.0% 77.8%
2f5kA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 57.0 6.19e-01 100.0% 100.0%
4mdwA00 2.30.30.1210 Mainly Beta › Roll › SH3 type barrels. › Domain of unknown function DUF1541 0.72 65.0 4.88e-01 100.0% 81.5%
4dq2A03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.70 47.0 5.21e-01 100.0% 93.6%
2budA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 55.0 4.87e-01 100.0% 58.7%
2ky9A01 2.30.30.1130 Mainly Beta › Roll › SH3 type barrels. › 0.69 55.0 5.41e-01 100.0% 80.6%
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 56.0 4.67e-01 100.0% 52.8%
7xpkA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.68 61.0 4.61e-01 100.0% 51.7%
2qi2A01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.67 52.0 4.46e-01 100.0% 51.9%
2l3rA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.65 55.0 5.26e-01 100.0% 80.8%
1whmA01 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.65 58.0 5.58e-01 100.0% 98.6%
4iupB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.65 51.0 5.18e-01 100.0% 88.7%
2mamA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 58.0 4.68e-01 100.0% 80.5%
1i1jB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 56.0 4.77e-01 100.0% 62.5%
4c0dB00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.63 49.0 3.57e-01 100.0% 29.3%
1ycyA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.62 45.0 4.53e-01 100.0% 79.0%
1boqA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.61 50.0 4.23e-01 92.1% 80.4%
1hpgA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.60 49.0 4.26e-01 92.1% 77.8%
3q5zA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.58 51.0 4.15e-01 100.0% 66.9%
3nqzA01 3.10.450.490 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 45.0 4.01e-01 92.1% 59.3%
4aghA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.57 35.0 3.30e-01 76.2% 48.8%
4gu4A01 2.10.25.20 Mainly Beta › Ribbon › Laminin › reovirus attachment protein sigma1; domain 1 0.57 27.0 3.23e-01 81.0% 67.4%
3wndA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.56 47.0 4.06e-01 100.0% 60.6%
2hcjB02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.56 45.0 3.95e-01 100.0% 58.5%
1vwxT01 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.56 46.0 4.05e-01 100.0% 61.9%
2qf4A02 2.40.10.350 Mainly Beta › Beta Barrel › Thrombin, subunit H › Rod shape-determining protein MreC, domain 2 0.54 45.0 4.06e-01 93.7% 87.9%
2cmgA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.53 37.0 3.98e-01 96.8% 94.1%
3bdlA01 2.40.50.90 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 40.0 3.05e-01 84.1% 68.7%
1pfsA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 40.0 3.82e-01 85.7% 92.3%
2q18X01 3.10.330.40 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.52 46.0 4.49e-01 100.0% 98.6%
2bujB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 43.0 3.80e-01 95.2% 87.2%
4exrA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 38.0 3.69e-01 96.8% 71.8%
3p26A03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.51 45.0 3.77e-01 100.0% 67.3%
4zciA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.50 40.0 3.48e-01 100.0% 56.4%
ECOD (36)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4026958 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.84 61.0 6.50e-01 100.0% 87.3%
3964733 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 52.0 5.56e-01 100.0% 78.2%
3570369 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.79 60.0 5.27e-01 100.0% 56.7%
3302166 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.78 62.0 6.16e-01 100.0% 81.5%
3886139 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.78 62.0 6.14e-01 100.0% 81.5%
3733806 4.1.1.72 ↗ beta barrels › SH3 › SH3 › SH3 › Hva1_TUDOR 0.77 71.0 6.69e-01 100.0% 85.3%
3557649 4.8.1.20 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › PWP3A-B_N 0.75 60.0 5.01e-01 100.0% 51.4%
3913782 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 61.0 6.13e-01 100.0% 85.9%
3730835 4.8.1.10 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.72 58.0 5.05e-01 100.0% 57.9%
3213215 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 60.0 4.87e-01 100.0% 49.6%
3918299 4.1.1.376 ↗ beta barrels › SH3 › SH3 › SH3 › Chromo_MORC2_6th 0.71 56.0 5.47e-01 100.0% 77.1%
3758536 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 56.0 5.41e-01 100.0% 77.1%
3791752 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 55.0 5.52e-01 100.0% 83.1%
3584555 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.68 60.0 5.76e-01 100.0% 85.7%
3931161 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 56.0 4.57e-01 100.0% 50.4%
3476615 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 60.0 5.53e-01 100.0% 86.3%
4020511 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 52.0 4.06e-01 100.0% 40.0%
3912620 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.64 57.0 5.25e-01 98.4% 93.8%
3175156 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.63 56.0 5.43e-01 100.0% 88.6%
3471363 4.1.1.41 ↗ beta barrels › SH3 › SH3 › SH3 › NOT2_3_5_C 0.63 49.0 3.64e-01 100.0% 32.0%
3728169 4.1.1.85 ↗ beta barrels › SH3 › SH3 › SH3 › MTR4_beta-barrel 0.62 54.0 4.42e-01 100.0% 72.5%
3586662 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 54.0 4.37e-01 100.0% 66.7%
2141907 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.61 50.0 3.57e-01 93.7% 43.7%
5042177 4.6.1.2 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.61 51.0 4.73e-01 100.0% 73.8%
3414877 4.27.1.1 ↗ beta barrels › SH3 › Mitoribosomal protein mS34 › Mitoribosomal protein mS34 › MRP-S34 0.57 49.0 3.80e-01 100.0% 43.3%
5002830 708.1.2.4 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › NTP_transf_9 0.56 44.0 3.82e-01 88.9% 74.0%
4321707 865.1.1.2 ↗ beta complex topology › PheT/TilS domain › PheT/TilS domain › PheT/TilS domain › TilS_C 0.56 39.0 3.30e-01 74.6% 74.3%
5005052 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.55 36.0 3.83e-01 73.0% 76.4%
4102465 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 44.0 3.77e-01 90.5% 76.0%
5080510 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.54 45.0 3.92e-01 100.0% 60.0%
3615013 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.52 46.0 3.78e-01 100.0% 53.9%
3287150 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.51 42.0 3.06e-01 100.0% 88.8%
5040464 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.51 46.0 4.01e-01 100.0% 68.4%
5038472 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.51 45.0 3.75e-01 100.0% 62.7%
3789008 1.1.5.85 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Peptidase_S64 0.50 42.0 2.78e-01 100.0% 86.3%
3713587 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.50 43.0 3.75e-01 98.4% 98.0%