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NC_042353.1__YP_009639663.1__FGG69_gp51__00051

Bact-Vir

NC_042353.1__YP_009639663.1__FGG69_gp51__00051

Identity

Accession:
NC_042353 ↗
Kingdom:
phage

Quality

68.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Kairosalinivirus› Salinibacter_phage_SRUTV-1

TaxID: 2684227

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 44-181
PDB
Domain cluster: rep: MN988533.1__QIG73729.1__EVC05_037__00037__D4-151
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4dkkA02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.78 40.0 5.31e-01 71.0% 91.9%
1h2iA01 3.30.390.80 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › DNA repair protein Rad52/59/22 0.70 62.0 6.03e-01 100.0% 86.5%
2jobA00 3.30.160.320 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.56 35.0 4.04e-01 71.0% 85.3%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4018556 330.1.1.4 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Rad52_Rad22 0.69 62.0 5.88e-01 100.0% 81.2%
3501861 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.66 41.0 4.72e-01 94.2% 82.9%
3451695 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.65 42.0 5.04e-01 93.5% 98.9%
3786132 330.1.1.4 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Rad52_Rad22 0.65 45.0 4.48e-01 71.7% 79.3%
3711062 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.65 40.0 4.55e-01 71.7% 84.0%
3253183 328.8.1.1 ↗ a+b two layers › IF3-like › Schlafen 8 › Schlafen 8 › SLFN_AlbA_2 0.61 48.0 3.89e-01 83.3% 77.7%
3974494 330.1.1.34 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DUF6348 0.59 39.0 4.62e-01 82.6% 96.8%
4117325 330.6.1.1 ↗ a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.56 38.0 4.00e-01 70.3% 82.3%
3611540 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.54 41.0 2.99e-01 82.6% 77.5%
5057645 9.2.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin 0.51 34.0 3.66e-01 78.3% 79.1%
136368 9.1.1.18 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › ApoM 0.51 33.0 3.05e-01 76.8% 52.4%
3500606 868.1.1.3 ↗ a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › Med20 0.51 35.0 3.21e-01 70.3% 81.6%
2597016 7579.1.1.49 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › GCE_fung 0.51 44.0 3.21e-01 94.2% 82.9%
D2 high residues 183-234
PDB