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NC_043027.1__YP_009664395.1__FK780_gp253__00193

Bact-Vir

NC_043027.1__YP_009664395.1__FK780_gp253__00193

Identity

Accession:
NC_043027 ↗
Kingdom:
phage

Quality

77.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-78
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3spcA02 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.69 53.0 4.42e-01 81.6% 70.9%
3tbiB02 6.10.140.1670 Special › Helix non-globular › Helix Hairpins › 0.65 54.0 4.94e-01 90.8% 77.0%
7oq4Z01 1.20.120.950 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein DUF5062 0.56 35.0 3.21e-01 72.4% 48.0%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3594725 3712.1.1.0 a+b complex topology › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 0.80 59.0 5.09e-01 90.8% 51.3%
4218502 605.1.1.279 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › Spo7 0.79 60.0 5.37e-01 86.8% 58.1%
4260997 5061.1.1.1 alpha complex topology › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › SecY 0.71 54.0 3.38e-01 84.2% 15.1%
3573038 4207.1.1.99 alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › RNA polymerase II holoenzyme component SRB7 (MED21) › PF28139 0.69 47.0 4.49e-01 71.1% 64.4%
1388531 604.27.1.0 alpha bundles › Spectrin repeat-like › Triple-helical domain in insecticidal protein Cry1Ac › Triple-helical domain in insecticidal protein Cry1Ac 0.62 48.0 4.39e-01 86.8% 62.6%
2818296 601.3.1.3 alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain › RIP_P131-like 0.51 36.0 3.12e-01 73.7% 62.7%
D2 high residues 88-159
PDB
Domain cluster: representative
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3pe0A03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 49.0 5.14e-01 95.8% 82.8%
1x43A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 53.0 5.62e-01 95.8% 96.8%
2epdA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 50.0 4.96e-01 95.8% 76.3%
1gcqB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 49.0 5.39e-01 93.1% 98.2%
4iimA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 49.0 5.47e-01 95.8% 100.0%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 50.0 4.83e-01 95.8% 74.7%
2eczA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 50.0 5.12e-01 95.8% 85.7%
1ov3A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 47.0 5.28e-01 91.7% 100.0%
2pqhB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 48.0 5.02e-01 94.4% 87.7%
4msxA02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.64 45.0 2.98e-01 100.0% 17.9%
6uzjA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 49.0 5.21e-01 95.8% 95.2%
2ekhA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 47.0 4.58e-01 94.4% 71.2%
6uy8A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 47.0 5.07e-01 93.1% 96.6%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 48.0 5.25e-01 94.4% 100.0%
1s1nA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 47.0 5.07e-01 94.4% 96.7%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 49.0 5.15e-01 94.4% 93.9%
6vlfA03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 46.0 5.07e-01 93.1% 100.0%
5o99A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 45.0 4.91e-01 94.4% 95.0%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 46.0 4.63e-01 94.4% 80.0%
7dpyB01 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.60 44.0 4.19e-01 90.3% 66.3%
3nmzD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 49.0 4.69e-01 97.2% 76.2%
1zuyA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 45.0 4.91e-01 91.7% 100.0%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 46.0 4.73e-01 97.2% 88.2%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 47.0 4.99e-01 95.8% 98.4%
8jx6A02 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.58 47.0 4.20e-01 87.5% 100.0%
2ke9A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 47.0 4.90e-01 93.1% 94.0%
1wfwA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 46.0 4.64e-01 94.4% 85.1%
3npfB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 48.0 4.97e-01 97.2% 98.5%
4a7kA03 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.57 46.0 3.71e-01 94.4% 91.8%
2vseA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.57 46.0 3.87e-01 97.2% 98.6%
2do3A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.57 37.0 4.25e-01 95.8% 96.1%
1ri9A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 41.0 4.09e-01 91.7% 75.3%
2evrA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 47.0 4.67e-01 94.4% 90.5%
6lf2B01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.56 45.0 3.92e-01 95.8% 98.4%
2kymA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 49.0 4.46e-01 97.2% 90.3%
3p54A02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.55 38.0 3.83e-01 97.2% 74.6%
2kssA01 2.30.30.630 Mainly Beta › Roll › SH3 type barrels. › 0.52 41.0 4.34e-01 91.7% 100.0%
4xtvB02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.52 33.0 3.74e-01 94.4% 95.8%
2aq5A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 39.0 2.53e-01 83.3% 23.8%
1hxdA03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.51 31.0 3.60e-01 91.7% 100.0%
6heiA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.50 41.0 2.76e-01 100.0% 20.7%
1zxuA00 2.40.160.200 Mainly Beta › Beta Barrel › Porin › LURP1-related 0.50 40.0 3.22e-01 93.1% 98.8%
6bioA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.50 36.0 3.95e-01 88.9% 100.0%
4ms4B02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.50 40.0 3.07e-01 90.3% 95.6%
2wjwA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.50 38.0 2.93e-01 81.9% 96.9%
ECOD (87)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3475881 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 50.0 5.15e-01 94.4% 77.1%
3998645 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.68 50.0 5.26e-01 94.4% 86.2%
3888222 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.67 51.0 5.20e-01 94.4% 82.9%
3563539 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.67 51.0 5.20e-01 95.8% 82.9%
3548244 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.67 50.0 5.42e-01 94.4% 95.0%
3575263 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.67 49.0 5.19e-01 93.1% 86.2%
3846069 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.66 50.0 5.23e-01 94.4% 87.7%
165781 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.66 50.0 5.15e-01 95.8% 84.1%
4483819 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.66 50.0 5.06e-01 94.4% 81.4%
3737825 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.66 47.0 5.34e-01 90.3% 98.2%
3561013 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.66 51.0 5.06e-01 97.2% 78.7%
3526950 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.66 49.0 5.38e-01 94.4% 95.0%
3876823 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.66 49.0 4.85e-01 93.1% 74.7%
3747208 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.66 48.0 4.63e-01 91.7% 68.8%
3900208 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.66 50.0 5.28e-01 95.8% 90.6%
3933965 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.66 48.0 5.35e-01 93.1% 96.6%
3886646 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.66 49.0 5.17e-01 94.4% 87.7%
3573775 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.66 49.0 5.14e-01 94.4% 87.7%
162441 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.66 49.0 4.98e-01 94.4% 80.3%
3269758 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.66 50.0 4.89e-01 97.2% 73.8%
3270547 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.66 49.0 5.15e-01 94.4% 87.7%
3269589 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.65 50.0 5.07e-01 95.8% 82.9%
3234274 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.65 50.0 5.07e-01 93.1% 82.9%
3566206 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.65 50.0 5.12e-01 97.2% 84.3%
3748846 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.65 48.0 5.05e-01 93.1% 86.2%
3696092 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.65 50.0 5.07e-01 95.8% 82.9%
3755099 604.1.1.97 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › SH3_1 0.65 50.0 4.70e-01 95.8% 68.2%
3542245 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.65 50.0 5.13e-01 97.2% 84.3%
3898363 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.65 49.0 5.05e-01 95.8% 82.9%
3906249 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.65 49.0 4.91e-01 95.8% 77.3%
3872095 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.65 47.0 5.24e-01 90.3% 98.2%
3543889 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.65 49.0 3.02e-01 95.8% 13.8%
4610859 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.65 50.0 5.24e-01 97.2% 90.8%
3267416 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.65 48.0 4.69e-01 94.4% 71.2%
3522947 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.65 48.0 5.01e-01 93.1% 86.2%
3399284 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.65 50.0 5.26e-01 97.2% 90.8%
2834765 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.65 48.0 4.89e-01 93.1% 81.2%
4019925 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.65 49.0 5.02e-01 95.8% 82.9%
4104114 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.65 48.0 5.07e-01 95.8% 87.7%
3899851 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.65 47.0 4.93e-01 91.7% 84.6%
3585447 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.65 49.0 4.76e-01 95.8% 72.5%
3911321 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.64 48.0 4.61e-01 93.1% 70.0%
3539147 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.64 49.0 4.99e-01 95.8% 82.9%
3914346 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.64 48.0 4.45e-01 94.4% 63.3%
165657 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.64 47.0 4.91e-01 93.1% 83.6%
4133335 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.64 48.0 5.20e-01 95.8% 95.0%
3719452 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.64 48.0 4.89e-01 93.1% 81.4%
3259033 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.64 48.0 5.20e-01 94.4% 95.0%
3487686 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 48.0 4.56e-01 94.4% 68.2%
3516244 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.64 50.0 4.81e-01 98.6% 75.0%
3625909 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.64 48.0 4.62e-01 94.4% 71.2%
3554162 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.63 50.0 5.26e-01 98.6% 93.8%
3487936 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 48.0 4.91e-01 94.4% 82.9%
3498357 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.63 48.0 4.95e-01 94.4% 84.3%
3401559 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.63 49.0 5.17e-01 95.8% 92.3%
3899829 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.63 52.0 5.21e-01 100.0% 86.7%
2636173 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.63 47.0 4.93e-01 94.4% 89.2%
3789233 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.63 50.0 5.24e-01 98.6% 95.4%
4003171 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.63 52.0 5.05e-01 100.0% 81.2%
3765007 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.62 52.0 5.26e-01 100.0% 91.4%
149928 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.62 49.0 4.29e-01 97.2% 57.5%
3526953 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.61 47.0 5.04e-01 94.4% 95.2%
423468 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.61 50.0 4.72e-01 97.2% 75.3%
3189994 375.1.1.19 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.60 37.0 3.45e-01 90.3% 48.9%
279006 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.60 47.0 4.80e-01 94.4% 87.0%
3898370 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.60 45.0 4.98e-01 91.7% 100.0%
3936225 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 47.0 4.76e-01 94.4% 85.7%
3891252 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.60 46.0 5.02e-01 94.4% 100.0%
4996608 2007.9.1.4 a/b three-layered sandwiches › Flavodoxin-like › Toll/Interleukin receptor TIR domain › Toll/Interleukin receptor TIR domain › TIR_2 0.60 38.0 2.77e-01 90.3% 23.5%
4451770 4237.1.1.1 beta barrels › FomD-like › FomD-like › FomD-like › DUF402 0.59 44.0 3.44e-01 80.6% 40.0%
4945288 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 36.0 4.08e-01 93.1% 100.0%
3254502 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.59 49.0 4.44e-01 95.8% 68.4%
3569639 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.58 48.0 4.69e-01 97.2% 81.2%
3742291 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.58 46.0 4.77e-01 97.2% 95.4%
4335022 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 50.0 4.52e-01 97.2% 73.7%
3208203 375.1.1.19 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.56 34.0 3.72e-01 88.9% 78.2%
2410170 4.1.1.58 beta barrels › SH3 › SH3 › SH3 › SH3_3 0.56 44.0 4.72e-01 93.1% 98.4%
3505640 375.1.1.19 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.56 34.0 3.68e-01 93.1% 73.3%
1393628 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.55 49.0 4.14e-01 98.6% 70.8%
4029057 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 46.0 4.14e-01 100.0% 90.5%
3554994 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.53 40.0 3.80e-01 98.6% 67.4%
3828657 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 45.0 4.07e-01 95.8% 86.0%
5015372 243.6.1.0 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.53 41.0 4.30e-01 91.7% 93.8%
3404595 219.1.1.14 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Josephin 0.52 45.0 3.45e-01 100.0% 40.6%
3292855 220.1.1.36 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_12 0.52 44.0 3.77e-01 98.6% 74.4%
3621099 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 43.0 3.89e-01 98.6% 85.7%
3509390 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.50 41.0 3.62e-01 97.2% 95.8%