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NC_043027.1__YP_009664440.1__FK780_gp208__00238
Bact-VirNC_043027.1__YP_009664440.1__FK780_gp208__00238
Identity
- Accession:
- NC_043027 ↗
- Kingdom:
- phage
Quality
87.3
mean pLDDT
Taxonomy
TaxID: 2884423
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 68-121
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01476.27 best | LysM | 30.3 | 4.60e-07 | 94.4% | 97.7% |
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5c8qB02 | 3.10.350.10 | Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain | 0.88 | 70.0 | 7.48e-01 | 98.1% | 100.0% |
| 4b8vA02 | 3.10.350.10 | Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain | 0.79 | 64.0 | 5.80e-01 | 100.0% | 65.8% |
| 2gu1A01 | 3.10.450.350 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.71 | 60.0 | 5.11e-01 | 100.0% | 58.0% |
| 3gfoA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.63 | 52.0 | 3.50e-01 | 100.0% | 29.1% |
| 4lrvF00 | 1.10.1220.160 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › DNA sulphur modification protein DndE | 0.62 | 47.0 | 3.81e-01 | 83.3% | 92.2% |
| 6k2cA02 | 3.30.2410.10 | Alpha Beta › 2-Layer Sandwich › Hect, E3 ligase catalytic fold › Hect, E3 ligase catalytic domain | 0.58 | 42.0 | 3.45e-01 | 81.5% | 79.1% |
| 2yv7A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.57 | 41.0 | 3.03e-01 | 75.9% | 79.0% |
| 1gyzA00 | 1.10.1900.20 | Mainly Alpha › Orthogonal Bundle › c-terminal domain of poly(a) binding protein › Ribosomal protein L20, C-terminal domain | 0.56 | 41.0 | 4.07e-01 | 83.3% | 86.7% |
| 5jxzA00 | 3.60.120.10 | Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase | 0.55 | 38.0 | 2.34e-01 | 72.2% | 45.3% |
| 4iiwA01 | 3.30.1490.480 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Endolytic murein transglycosylase | 0.53 | 43.0 | 3.86e-01 | 90.7% | 72.4% |
| 1k8bA00 | 3.30.30.50 | Alpha Beta › 2-Layer Sandwich › Defensin A-like › Translation initiation factor 2 beta, aIF2beta, N-terminal domain | 0.53 | 39.0 | 4.03e-01 | 83.3% | 98.1% |
| 3lrkA02 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.53 | 43.0 | 3.27e-01 | 98.1% | 80.3% |
| 5jgfA01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.50 | 40.0 | 2.61e-01 | 98.1% | 93.7% |
ECOD (43)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3838194 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.95 | 76.0 | 8.33e-01 | 98.1% | 100.0% |
| 4205026 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.94 | 76.0 | 7.06e-01 | 100.0% | 70.8% |
| 3464064 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.94 | 76.0 | 6.35e-01 | 100.0% | 54.1% |
| 3381619 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.93 | 75.0 | 4.53e-01 | 100.0% | 15.7% |
| 4448562 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.92 | 71.0 | 7.13e-01 | 96.3% | 80.0% |
| 3898121 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.92 | 74.0 | 7.40e-01 | 100.0% | 83.6% |
| 3974521 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.91 | 73.0 | 7.06e-01 | 100.0% | 76.7% |
| 3969916 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.91 | 73.0 | 6.63e-01 | 100.0% | 65.7% |
| 3587382 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.90 | 78.0 | 7.80e-01 | 100.0% | 90.9% |
| 2035755 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.90 | 72.0 | 5.73e-01 | 100.0% | 46.5% |
| 3458171 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.90 | 73.0 | 6.83e-01 | 100.0% | 72.3% |
| 2124917 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.89 | 72.0 | 4.98e-01 | 100.0% | 29.2% |
| 4176074 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.88 | 81.0 | 7.83e-01 | 100.0% | 90.0% |
| 2047861 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.87 | 71.0 | 6.93e-01 | 100.0% | 81.0% |
| 4483829 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.87 | 80.0 | 7.47e-01 | 100.0% | 87.7% |
| 4069716 | 101.15.1.14 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM, LysM2_CERK1_LYK3_4_5 | 0.87 | 75.0 | 5.62e-01 | 100.0% | 41.7% |
| 2124918 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.85 | 72.0 | 5.26e-01 | 100.0% | 36.8% |
| 3359799 | 101.15.1.10 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM2_NFP | 0.84 | 72.0 | 5.25e-01 | 100.0% | 37.6% |
| 3972010 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.83 | 72.0 | 6.95e-01 | 94.4% | 93.3% |
| None | — | 0.82 | 71.0 | 5.32e-01 | 100.0% | 40.8% | |
| 3375189 | 101.15.1.10 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM2_NFP | 0.81 | 68.0 | 6.24e-01 | 100.0% | 71.4% |
| 3651054 | 101.15.1.10 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM2_NFP | 0.80 | 68.0 | 4.82e-01 | 100.0% | 32.3% |
| 3966498 | 101.15.1.3 ↗ | alpha arrays › HTH › LysM domain › LysM domain › Phage_tail_X | 0.80 | 72.0 | 6.72e-01 | 100.0% | 81.5% |
| 3666767 | 101.15.1.10 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM2_NFP | 0.80 | 68.0 | 5.37e-01 | 100.0% | 47.6% |
| 3367888 | 101.15.1.5 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM3_LYK4_5 | 0.79 | 70.0 | 6.40e-01 | 100.0% | 74.3% |
| 3422876 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.78 | 67.0 | 6.49e-01 | 100.0% | 86.7% |
| 3647286 | 101.15.1.7 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM_RLK | 0.77 | 65.0 | 5.82e-01 | 100.0% | 68.0% |
| 3989756 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.77 | 63.0 | 6.62e-01 | 96.3% | 100.0% |
| 3819870 | 101.15.1.6 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM2_CERK1_LYK3_4_5 | 0.74 | 66.0 | 4.84e-01 | 100.0% | 39.3% |
| 3185732 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.74 | 65.0 | 6.51e-01 | 100.0% | 96.4% |
| 3963519 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.73 | 65.0 | 6.11e-01 | 100.0% | 89.2% |
| 3390003 | 108.1.1.67 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_PLCG2 | 0.64 | 51.0 | 4.36e-01 | 92.6% | 84.2% |
| 4934946 | 101.1.2.28 ↗ | alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B | 0.59 | 48.0 | 4.31e-01 | 94.4% | 77.5% |
| 3838313 | 3536.1.1.0 ↗ | a+b complex topology › Lmo1499 protein N-terminal domains › Lmo1499 protein N-terminal domains › Lmo1499 protein N-terminal domains | 0.57 | 44.0 | 4.04e-01 | 92.6% | 86.3% |
| 3950673 | 3536.1.1.1 ↗ | a+b complex topology › Lmo1499 protein N-terminal domains › Lmo1499 protein N-terminal domains › Lmo1499 protein N-terminal domains › YceG | 0.57 | 46.0 | 4.32e-01 | 100.0% | 74.3% |
| 4561193 | 3536.1.1.1 ↗ | a+b complex topology › Lmo1499 protein N-terminal domains › Lmo1499 protein N-terminal domains › Lmo1499 protein N-terminal domains › YceG | 0.54 | 43.0 | 4.14e-01 | 96.3% | 79.7% |
| 3963112 | 3536.1.1.0 ↗ | a+b complex topology › Lmo1499 protein N-terminal domains › Lmo1499 protein N-terminal domains › Lmo1499 protein N-terminal domains | 0.53 | 44.0 | 4.08e-01 | 100.0% | 73.3% |
| 3968266 | 3536.1.1.0 ↗ | a+b complex topology › Lmo1499 protein N-terminal domains › Lmo1499 protein N-terminal domains › Lmo1499 protein N-terminal domains | 0.53 | 45.0 | 3.73e-01 | 100.0% | 57.1% |
| 4024943 | 4351.1.1.0 ↗ | alpha arrays › ATP12-like › ATP12-like › ATP12-like | 0.53 | 44.0 | 2.94e-01 | 92.6% | 40.5% |
| 3284913 | 3781.1.1.1 ↗ | a+b two layers › Ribosomal protein L11/L12e N-terminal domain-like › Ribosomal protein L11/L12e N-terminal domain › Ribosomal protein L11/L12e N-terminal domain › Ribosomal_L11_N | 0.53 | 41.0 | 3.93e-01 | 100.0% | 75.4% |
| 4976900 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.52 | 39.0 | 3.47e-01 | 87.0% | 52.2% |
| 3845947 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.50 | 40.0 | 3.93e-01 | 94.4% | 88.3% |
| 4440295 | 101.1.9.5 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 | 0.50 | 37.0 | 3.19e-01 | 77.8% | 55.3% |
D2
medium
residues 1-57
Domain cluster:
representative