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NC_043027.1__YP_009664507.1__FK780_gp141__00305
Bact-VirNC_043027.1__YP_009664507.1__FK780_gp141__00305
Identity
- Accession:
- NC_043027 ↗
- Kingdom:
- phage
Quality
95.7
mean pLDDT
Taxonomy
TaxID: 2884423
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-29_180-235
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3q9vA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 52.0 | 4.82e-01 | 97.4% | 67.3% |
| 3pvlA03 | 1.20.80.10 | Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › | 0.64 | 47.0 | 4.08e-01 | 80.8% | 50.8% |
| 4h33A00 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.64 | 35.0 | 3.33e-01 | 80.8% | 44.0% |
| 4qysA01 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.60 | 45.0 | 3.20e-01 | 80.8% | 81.9% |
| 1t6sA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 48.0 | 4.68e-01 | 93.6% | 80.2% |
| 7uuim02 | 1.10.1580.10 | Mainly Alpha › Orthogonal Bundle › Conserved Hypothetical Protein Ylqf; Chain: A; domain 2 › | 0.59 | 42.0 | 4.14e-01 | 74.4% | 84.0% |
| 7ccmB01 | 1.10.437.10 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like | 0.57 | 47.0 | 3.89e-01 | 91.0% | 54.5% |
| 2yhsA01 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.55 | 36.0 | 3.38e-01 | 75.6% | 53.6% |
| 3n4eA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.55 | 38.0 | 3.53e-01 | 82.1% | 54.8% |
| 4fxdA05 | 3.90.1600.10 | Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain | 0.54 | 41.0 | 3.59e-01 | 97.4% | 54.7% |
| 1txuA02 | 1.20.1050.80 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › VPS9 domain | 0.53 | 42.0 | 3.42e-01 | 88.5% | 68.8% |
| 1a0pA01 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.52 | 41.0 | 3.98e-01 | 91.0% | 74.7% |
| 1a41A02 | 1.20.120.380 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Type 1-topoisomerase catalytic fragment, domain 2 | 0.52 | 39.0 | 3.76e-01 | 83.3% | 70.2% |
| 3tupA02 | 3.30.70.380 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain | 0.50 | 39.0 | 3.69e-01 | 85.9% | 68.8% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4931894 | 102.1.2.4 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › AGOG | 0.82 | 73.0 | 5.08e-01 | 97.4% | 97.1% |
| 5071770 | 101.1.2.923 ↗ | alpha arrays › HTH › HTH › winged helix domain › Zn_ribbon_PF0610 | 0.61 | 53.0 | 4.92e-01 | 96.2% | 96.0% |
| 3176070 | 592.2.1.8 ↗ | alpha arrays › PWI domain-like › YugE-like › YugE-like › EPL1 | 0.59 | 43.0 | 4.07e-01 | 80.8% | 82.0% |
| 3369798 | 101.1.1.121 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 | 0.59 | 44.0 | 4.31e-01 | 82.1% | 94.1% |
| 3940582 | 189.1.1.1 ↗ | alpha bundles › GTPase activation domain, GAP › GTPase activation domain, GAP › GTPase activation domain, GAP › RasGAP | 0.54 | 46.0 | 3.06e-01 | 100.0% | 47.7% |
| 4005722 | 181.1.1.1 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N | 0.54 | 35.0 | 3.34e-01 | 74.4% | 54.7% |
| 3699129 | 102.1.2.22 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › Oscp1 | 0.54 | 42.0 | 3.35e-01 | 84.6% | 89.0% |
| 3895655 | 109.2.1.4 ↗ | alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Cobalamin_bind | 0.54 | 37.0 | 2.50e-01 | 71.8% | 22.1% |
| 5067158 | 4044.1.1.0 ↗ | alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins | 0.53 | 45.0 | 3.43e-01 | 93.6% | 84.3% |
| 4024423 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.52 | 44.0 | 3.46e-01 | 92.3% | 75.0% |
| 4408850 | 4044.1.1.0 ↗ | alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins | 0.52 | 45.0 | 3.66e-01 | 98.7% | 89.7% |
| 4666985 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.51 | 39.0 | 3.73e-01 | 88.5% | 76.0% |
D2
high
residues 34-175
Domain cluster:
representative
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1pu6A02 | 1.10.340.30 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 | 0.81 | 63.0 | 6.78e-01 | 100.0% | 93.5% |
| 2rp5A00 | 1.10.150.830 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.74 | 38.0 | 4.19e-01 | 71.8% | 59.8% |
| 2h56A02 | 1.10.340.30 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 | 0.74 | 56.0 | 6.15e-01 | 100.0% | 98.2% |
| 1ngnA00 | 1.10.340.30 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 | 0.74 | 51.0 | 5.08e-01 | 100.0% | 68.8% |
| 4unfA02 | 1.10.340.30 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 | 0.71 | 54.0 | 5.83e-01 | 100.0% | 95.7% |
| 4uobA02 | 1.10.340.30 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 | 0.71 | 58.0 | 6.10e-01 | 100.0% | 96.0% |
| 3f0zA02 | 1.10.340.30 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 | 0.71 | 56.0 | 6.05e-01 | 97.9% | 97.5% |
| 3lcnB00 | 1.10.340.40 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain | 0.62 | 40.0 | 4.68e-01 | 93.0% | 92.8% |
| 2w9mB01 | 1.10.150.110 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DNA polymerase beta, N-terminal domain-like | 0.62 | 36.0 | 4.44e-01 | 94.4% | 93.0% |
| 1c9bA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.59 | 31.0 | 3.70e-01 | 97.9% | 74.2% |
| 6ig5A01 | 1.10.275.10 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) | 0.58 | 44.0 | 4.46e-01 | 98.6% | 81.2% |
| 6a95A01 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.55 | 35.0 | 3.74e-01 | 81.0% | 71.4% |
| 1ei5A01 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.55 | 43.0 | 3.39e-01 | 84.5% | 83.8% |
| 5xs2B02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.54 | 35.0 | 3.62e-01 | 86.6% | 68.9% |
| 3bgwA01 | 1.10.860.10 | Mainly Alpha › Orthogonal Bundle › DNAb Helicase; Chain A › DNAb Helicase; Chain A | 0.53 | 31.0 | 3.25e-01 | 97.9% | 61.1% |
| 2hpsA00 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.51 | 42.0 | 3.88e-01 | 89.4% | 92.9% |
| 3kraC00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.50 | 44.0 | 3.64e-01 | 98.6% | 94.5% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4994571 | 102.1.2.1 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD | 0.81 | 63.0 | 5.33e-01 | 100.0% | 51.8% |
| 3029 | 102.1.2.1 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD | 0.81 | 63.0 | 5.42e-01 | 100.0% | 53.0% |
| 4934680 | 102.1.2.1 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD | 0.80 | 63.0 | 5.33e-01 | 100.0% | 52.7% |
| 4032194 | 102.1.2.1 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD | 0.79 | 60.0 | 5.24e-01 | 100.0% | 53.8% |
| 4957426 | 102.1.2.1 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD | 0.79 | 58.0 | 5.12e-01 | 100.0% | 54.0% |
| 5036201 | 102.1.2.1 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD | 0.78 | 62.0 | 5.27e-01 | 100.0% | 53.2% |
| 4937886 | 102.1.2.1 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD | 0.77 | 60.0 | 5.07e-01 | 100.0% | 50.4% |
| 5010691 | 102.1.2.1 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD | 0.77 | 57.0 | 4.79e-01 | 100.0% | 46.8% |
| 180653 | 102.1.2.1 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD | 0.76 | 57.0 | 5.03e-01 | 100.0% | 54.1% |
| 2875755 | 102.1.2.1 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD | 0.72 | 54.0 | 4.58e-01 | 100.0% | 47.3% |
| 1558902 | 102.1.2.1 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD | 0.71 | 57.0 | 4.76e-01 | 100.0% | 50.0% |
| 3952367 | 102.1.2.1 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD | 0.71 | 57.0 | 4.88e-01 | 100.0% | 55.3% |
| 3992124 | 102.1.1.1 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › SAM_1 | 0.70 | 33.0 | 3.90e-01 | 100.0% | 63.0% |
| 4973641 | 102.1.2.1 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD | 0.70 | 58.0 | 5.01e-01 | 100.0% | 58.6% |
| 5071832 | 102.1.2.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase | 0.69 | 55.0 | 4.76e-01 | 98.6% | 56.2% |
| 3728706 | 102.1.2.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase | 0.68 | 59.0 | 5.60e-01 | 100.0% | 78.1% |
| 5065258 | 102.1.2.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase | 0.68 | 59.0 | 4.94e-01 | 100.0% | 55.7% |
| None | — | 0.67 | 56.0 | 4.79e-01 | 100.0% | 56.8% | |
| 3331963 | 102.1.2.1 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD | 0.67 | 60.0 | 4.65e-01 | 100.0% | 45.5% |
| 3461875 | 102.1.2.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase | 0.67 | 60.0 | 5.41e-01 | 100.0% | 71.3% |
| 2485687 | 4953.2.1.0 ↗ | beta barrels › L-aspartase C-terminal domain-like › Lid-like insertion of Propionyl-CoA synthase (PCS) ligase domain › Lid-like insertion of Propionyl-CoA synthase (PCS) ligase domain | 0.62 | 37.0 | 4.60e-01 | 71.8% | 97.6% |
| 4030492 | 102.1.2.1 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD | 0.62 | 57.0 | 4.91e-01 | 100.0% | 69.5% |
| 3385552 | 186.1.1.0 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N | 0.57 | 36.0 | 4.39e-01 | 85.2% | 100.0% |
| 3941994 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.54 | 49.0 | 4.46e-01 | 100.0% | 88.4% |
| 3735906 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.54 | 38.0 | 3.26e-01 | 73.2% | 61.6% |
| 1758745 | 2004.1.1.221 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › P-loop_TraG | 0.53 | 43.0 | 3.92e-01 | 99.3% | 64.7% |
| 3637728 | 1128.1.1.1 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR | 0.50 | 25.0 | 2.87e-01 | 96.5% | 60.0% |