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YP_009666076.1
Arc-VirNC_043427__YP_009666076.1__FK997-gp31__00031
Identity
- Accession:
- NC_043427 ↗
- Protein ID:
- YP_009666076.1 ↗
- Kingdom:
- archaea
Quality
83.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-66
Domain cluster:
representative
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ewfA02 | 1.20.1270.310 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.78 | 69.0 | 6.29e-01 | 100.0% | 77.8% |
| 1e1dA02 | 1.20.1270.20 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.77 | 67.0 | 6.05e-01 | 100.0% | 76.2% |
| 1op1A00 | 1.20.81.10 | Mainly Alpha › Up-down Bundle › Receptor-associated Protein › RAP domain | 0.77 | 63.0 | 5.75e-01 | 93.3% | 82.9% |
| 1d2mA03 | 6.10.140.240 | Special › Helix non-globular › Helix Hairpins › | 0.76 | 58.0 | 5.69e-01 | 83.3% | 77.3% |
| 3f7cA00 | 1.20.1590.10 | Mainly Alpha › Up-down Bundle › YP_001051499.1 fold like › YP_001051499.1 domain like | 0.75 | 65.0 | 4.54e-01 | 100.0% | 56.3% |
| 2bdeA03 | 1.20.58.1160 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.72 | 49.0 | 4.58e-01 | 71.7% | 59.7% |
| 4v1gA00 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.72 | 48.0 | 4.34e-01 | 70.0% | 80.0% |
| 6t4hA03 | 1.10.3060.10 | Mainly Alpha › Orthogonal Bundle › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA | 0.71 | 61.0 | 4.43e-01 | 96.7% | 96.5% |
| 2x2vA00 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.71 | 48.0 | 4.64e-01 | 70.0% | 100.0% |
| 3t46A00 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.71 | 60.0 | 5.64e-01 | 100.0% | 85.3% |
| 2g3kA00 | 1.20.120.1130 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Vps28 C-terminal domain | 0.69 | 60.0 | 5.25e-01 | 100.0% | 70.2% |
| 3lssA01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.69 | 50.0 | 4.16e-01 | 80.0% | 88.4% |
| 1dysA00 | 3.20.20.40 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › 1, 4-beta cellobiohydrolase | 0.69 | 60.0 | 3.70e-01 | 96.7% | 94.8% |
| 1o9gA02 | 1.10.287.540 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.69 | 47.0 | 5.11e-01 | 71.7% | 100.0% |
| 2xubA05 | 6.10.140.1450 | Special › Helix non-globular › Helix Hairpins › | 0.69 | 46.0 | 4.00e-01 | 70.0% | 89.6% |
| 3fvvA02 | 1.20.1440.100 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › SG protein - dephosphorylation function | 0.68 | 55.0 | 5.17e-01 | 98.3% | 73.3% |
| 2gscC00 | 1.20.1440.60 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence | 0.67 | 55.0 | 4.71e-01 | 100.0% | 67.3% |
| 7c1iA01 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.66 | 56.0 | 4.77e-01 | 100.0% | 57.0% |
| 3vkgA12 | 1.10.287.2610 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.66 | 45.0 | 3.12e-01 | 71.7% | 22.3% |
| 3nymA00 | 6.10.290.10 | Special › Helix non-globular › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.66 | 57.0 | 4.57e-01 | 98.3% | 87.1% |
| 2xzmO02 | 1.10.287.10 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding | 0.65 | 45.0 | 4.39e-01 | 75.0% | 65.7% |
| 1wkbA03 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.64 | 55.0 | 4.35e-01 | 95.0% | 76.0% |
| 1qsdA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.62 | 43.0 | 3.64e-01 | 71.7% | 44.1% |
| 3hx3A01 | 1.10.8.20 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › N-terminal domain of phosphatidylinositol transfer protein sec14p | 0.56 | 45.0 | 4.40e-01 | 90.0% | 80.6% |
| 6h7bA01 | 1.10.1900.10 | Mainly Alpha › Orthogonal Bundle › c-terminal domain of poly(a) binding protein › c-terminal domain of poly(a) binding protein | 0.55 | 41.0 | 3.90e-01 | 100.0% | 67.6% |
| 4cxfA01 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.52 | 45.0 | 3.98e-01 | 96.7% | 88.5% |
| 2lklA01 | 1.10.1900.40 | Mainly Alpha › Orthogonal Bundle › c-terminal domain of poly(a) binding protein › Acidic terminal segments, variant surface antigen of PfEMP1 | 0.52 | 46.0 | 4.33e-01 | 100.0% | 91.7% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5016324 | 601.3.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain | 0.80 | 72.0 | 6.15e-01 | 100.0% | 71.6% |
| 3888928 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.80 | 71.0 | 6.47e-01 | 100.0% | 75.0% |
| 4943145 | 601.28.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like | 0.78 | 69.0 | 5.91e-01 | 100.0% | 67.4% |
| 3265419 | 1128.1.1.0 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein | 0.76 | 67.0 | 6.05e-01 | 96.7% | 81.2% |
| 4848262 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.72 | 50.0 | 4.09e-01 | 71.7% | 40.2% |
| 3968817 | 3831.1.1.1 ↗ | alpha bundles › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › LprI | 0.71 | 60.0 | 5.43e-01 | 100.0% | 75.3% |
| 4652715 | 3831.1.1.0 ↗ | alpha bundles › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 | 0.68 | 59.0 | 4.98e-01 | 100.0% | 61.0% |
| 4055485 | 192.4.1.1 ↗ | alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) › Ribosomal_L29 | 0.68 | 45.0 | 4.36e-01 | 70.0% | 64.3% |
| 3999857 | 632.6.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit | 0.67 | 58.0 | 5.34e-01 | 93.3% | 76.0% |
| 3350539 | 192.23.1.6 ↗ | alpha bundles › Long alpha-hairpin › DUF683 › DUF683 › Med10 | 0.66 | 44.0 | 4.00e-01 | 71.7% | 49.4% |
| 5072892 | 601.28.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like | 0.66 | 56.0 | 4.90e-01 | 100.0% | 66.3% |
| 3303117 | 605.4.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein | 0.65 | 53.0 | 4.88e-01 | 100.0% | 90.6% |
| 3873167 | 174.1.1.1 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin | 0.58 | 50.0 | 3.83e-01 | 100.0% | 58.2% |
| 3198319 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.58 | 44.0 | 2.78e-01 | 83.3% | 66.0% |
| 3703911 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.55 | 43.0 | 2.96e-01 | 88.3% | 32.4% |
| 3590222 | 2004.1.1.430 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, ABC_tran_Xtn | 0.54 | 45.0 | 2.71e-01 | 96.7% | 11.8% |