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YP_009666091.1
Arc-VirNC_043427__YP_009666091.1__FK997-gp46__00046
Identity
- Accession:
- NC_043427 ↗
- Protein ID:
- YP_009666091.1 ↗
- Kingdom:
- archaea
Quality
88.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-88
Domain cluster:
representative
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4r03A00 | 2.40.128.720 | Mainly Beta › Beta Barrel › Lipocalin › | 0.70 | 55.0 | 5.05e-01 | 84.3% | 72.5% |
| 4ge1C00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.67 | 58.0 | 4.40e-01 | 95.2% | 48.2% |
| 4gf4A00 | 2.40.160.180 | Mainly Beta › Beta Barrel › Porin › Carbohydrate-selective porin OprB | 0.66 | 49.0 | 3.33e-01 | 78.3% | 23.7% |
| 3gxwC00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.65 | 51.0 | 4.77e-01 | 100.0% | 69.0% |
| 1aqbA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.65 | 54.0 | 4.23e-01 | 90.4% | 55.4% |
| 1vprA03 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.63 | 44.0 | 3.62e-01 | 79.5% | 38.9% |
| 4r8oA00 | 2.40.128.720 | Mainly Beta › Beta Barrel › Lipocalin › | 0.63 | 46.0 | 4.39e-01 | 77.1% | 67.3% |
| 3we5A00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.62 | 55.0 | 4.65e-01 | 100.0% | 71.6% |
| 1h54B01 | 2.70.98.40 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain | 0.62 | 45.0 | 3.14e-01 | 77.1% | 60.2% |
| 3qkgA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.60 | 45.0 | 3.67e-01 | 81.9% | 68.3% |
| 4hgzA02 | 2.20.25.570 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.59 | 38.0 | 4.35e-01 | 71.1% | 90.0% |
| 2l5pA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.59 | 44.0 | 3.52e-01 | 80.7% | 61.7% |
| 5tf2A00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.59 | 47.0 | 3.11e-01 | 86.7% | 50.9% |
| 2lexA00 | 2.20.25.80 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › WRKY domain | 0.58 | 38.0 | 4.22e-01 | 100.0% | 88.9% |
| 5e4bA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.57 | 49.0 | 3.87e-01 | 95.2% | 63.1% |
| 5h9kA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.57 | 49.0 | 4.00e-01 | 95.2% | 50.6% |
| 2o62A01 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.57 | 44.0 | 3.84e-01 | 84.3% | 84.7% |
| 3otlA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.56 | 48.0 | 3.93e-01 | 94.0% | 64.7% |
| 3l4rA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.56 | 40.0 | 3.32e-01 | 75.9% | 44.4% |
| 7zgmA01 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.56 | 41.0 | 2.96e-01 | 78.3% | 57.8% |
| 1dfvA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.55 | 46.0 | 3.73e-01 | 95.2% | 48.6% |
| 1epaA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.55 | 43.0 | 3.52e-01 | 86.7% | 65.0% |
| 2il5A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.54 | 47.0 | 3.77e-01 | 95.2% | 67.3% |
| 3gmvX00 | 3.10.450.730 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › BLIP domain | 0.54 | 39.0 | 3.22e-01 | 75.9% | 62.8% |
| 3pu2B00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.54 | 47.0 | 3.89e-01 | 97.6% | 61.4% |
| 4ggtB00 | 2.40.128.30 | Mainly Beta › Beta Barrel › Lipocalin › Avidin-like | 0.53 | 44.0 | 4.15e-01 | 95.2% | 84.9% |
| 7wa9A01 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.53 | 46.0 | 3.94e-01 | 100.0% | 66.0% |
| 2wsuA01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 45.0 | 3.85e-01 | 100.0% | 69.8% |
| 1twfB04 | 3.90.1110.10 | Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 | 0.51 | 42.0 | 3.32e-01 | 90.4% | 89.8% |
ECOD (31)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1346676 | 3347.1.1.1 ↗ | beta meanders › Uncharacterized protein BF3112 › Uncharacterized protein BF3112 › Uncharacterized protein BF3112 › DUF3836 | 0.70 | 55.0 | 5.05e-01 | 84.3% | 72.5% |
| 5018124 | 9.2.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin | 0.66 | 49.0 | 4.88e-01 | 95.2% | 77.6% |
| 3739953 | 4051.1.1.2 ↗ | a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A | 0.62 | 55.0 | 4.50e-01 | 100.0% | 64.5% |
| 3217673 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.61 | 51.0 | 4.68e-01 | 91.6% | 70.5% |
| 3309384 | 9.13.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like › Dirigent | 0.61 | 52.0 | 4.66e-01 | 96.4% | 80.7% |
| 5007185 | 71.1.1.0 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB | 0.60 | 53.0 | 4.40e-01 | 98.8% | 71.7% |
| 3456551 | 331.3.1.43 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PDF2_C | 0.60 | 52.0 | 3.64e-01 | 95.2% | 55.7% |
| 3255196 | 4970.1.1.28 ↗ | alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › SPC25 | 0.59 | 48.0 | 4.52e-01 | 90.4% | 94.2% |
| 3945260 | 5084.1.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like | 0.59 | 50.0 | 4.10e-01 | 95.2% | 71.5% |
| 4032043 | 331.3.1.9 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 | 0.57 | 49.0 | 3.95e-01 | 95.2% | 67.3% |
| 3973684 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.57 | 46.0 | 3.99e-01 | 89.2% | 87.4% |
| 4011496 | 4019.1.1.0 ↗ | alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins | 0.57 | 48.0 | 3.21e-01 | 96.4% | 22.2% |
| 853 | 9.1.1.23 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF3598_N | 0.57 | 44.0 | 3.83e-01 | 84.3% | 84.1% |
| 3941019 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.57 | 50.0 | 4.55e-01 | 100.0% | 76.5% |
| 4964630 | 331.3.1.11 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 | 0.57 | 51.0 | 4.27e-01 | 100.0% | 60.8% |
| 4968514 | 331.9.1.0 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain | 0.56 | 41.0 | 3.60e-01 | 96.4% | 51.2% |
| 3924939 | 4210.1.1.1 ↗ | a+b two layers › WGR domain › WGR domain › WGR domain › WGR | 0.56 | 43.0 | 3.90e-01 | 83.1% | 67.0% |
| 3650512 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.56 | 47.0 | 3.31e-01 | 97.6% | 45.6% |
| 3791220 | 4210.1.1.1 ↗ | a+b two layers › WGR domain › WGR domain › WGR domain › WGR | 0.56 | 43.0 | 3.82e-01 | 84.3% | 75.0% |
| 420412 | 331.3.1.9 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 | 0.55 | 48.0 | 4.07e-01 | 95.2% | 63.0% |
| 3484248 | 4210.1.1.0 ↗ | a+b two layers › WGR domain › WGR domain › WGR domain | 0.55 | 42.0 | 3.82e-01 | 84.3% | 65.0% |
| 3792470 | 241.15.1.3 ↗ | a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › SPC25 | 0.54 | 47.0 | 4.15e-01 | 98.8% | 78.4% |
| 3917054 | 241.15.1.3 ↗ | a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › SPC25 | 0.54 | 47.0 | 4.17e-01 | 100.0% | 77.6% |
| 408353 | 331.3.1.9 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 | 0.54 | 47.0 | 3.90e-01 | 97.6% | 61.8% |
| 3283514 | 2003.1.5.151 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23, Methyltransf_25 | 0.54 | 42.0 | 2.95e-01 | 81.9% | 90.4% |
| 3441723 | 5.1.3.118 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 | 0.54 | 44.0 | 3.13e-01 | 92.8% | 51.6% |
| 3421020 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.54 | 46.0 | 3.44e-01 | 97.6% | 64.5% |
| 3450584 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.53 | 44.0 | 3.06e-01 | 95.2% | 46.0% |
| 4955671 | 7089.1.1.0 ↗ | a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD | 0.53 | 42.0 | 4.33e-01 | 90.4% | 93.8% |
| 3222359 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.52 | 44.0 | 3.99e-01 | 95.2% | 69.7% |
| 4955450 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.51 | 42.0 | 3.84e-01 | 100.0% | 66.4% |