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YP_009666099.1

Arc-Vir

NC_043427__YP_009666099.1__FK997-gp54__00054

Identity

Accession:
NC_043427 ↗
Protein ID:
YP_009666099.1 ↗
Kingdom:
archaea

Quality

82.6 mean pLDDT

Taxonomy

Spiraviridae› Alphaspiravirus› Alphaspiravirus_yamagawaense

TaxID: 1157339

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-106
PDB
Domain cluster: rep: IMGVR_UViG_3300005915_004498-3300005915-Ga0075122_1001185311__D5-93
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6kf9G01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.86 56.0 6.30e-01 85.6% 84.1%
3l9fA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.83 66.0 7.06e-01 95.2% 96.6%
7jgsG02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.81 66.0 6.80e-01 92.3% 90.8%
4esjA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 52.0 5.54e-01 79.8% 75.6%
2qbyA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 63.0 6.75e-01 94.2% 96.7%
3elkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 63.0 6.37e-01 98.1% 83.8%
1sfxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 53.0 5.40e-01 89.4% 69.2%
5dymA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 63.0 6.61e-01 98.1% 92.7%
4kt5C00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 54.0 5.79e-01 89.4% 84.1%
2p4wA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 54.0 5.49e-01 96.2% 72.8%
3u1dB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 58.0 5.15e-01 92.3% 58.0%
2dqlA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 58.0 5.60e-01 91.3% 73.0%
1fnnB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 61.0 6.22e-01 95.2% 87.4%
2qbyB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 61.0 6.50e-01 98.1% 100.0%
1bm9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 65.0 6.21e-01 98.1% 82.5%
1t98A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 54.0 5.91e-01 91.3% 93.1%
7xc2A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 54.0 5.43e-01 92.3% 84.9%
3g3sA01 3.40.630.110 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › GNAT acetyltransferase-like 0.66 37.0 3.60e-01 76.0% 48.3%
3l4gC01 3.30.1370.240 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.64 46.0 4.66e-01 91.3% 75.2%
5hvqC01 3.90.1150.220 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.62 44.0 4.89e-01 82.7% 97.5%
3hluA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 30.0 3.50e-01 73.1% 75.3%
1b24A01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.53 43.0 4.47e-01 94.2% 94.7%
2abyA00 3.30.70.1980 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Uncharacterised protein PF09406, DUF2004 0.52 31.0 2.96e-01 76.9% 49.2%
1repC02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 40.0 4.23e-01 81.7% 95.6%
5z9iA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.51 38.0 2.65e-01 79.8% 75.4%
3ktwB00 3.30.56.30 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › Signal recognition particle, SRP19-like subunit 0.51 35.0 3.67e-01 71.2% 81.7%
ECOD (95)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4976651 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.93 61.0 7.47e-01 80.8% 100.0%
5045315 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.88 67.0 6.47e-01 86.5% 71.3%
5074322 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.86 55.0 6.27e-01 82.7% 86.1%
5003912 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.83 74.0 6.30e-01 94.2% 73.8%
4358890 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.82 69.0 6.67e-01 92.3% 80.0%
4109840 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.82 67.0 6.88e-01 91.3% 90.0%
4962870 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.82 69.0 6.51e-01 94.2% 75.6%
4974161 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.82 69.0 6.46e-01 92.3% 74.2%
4503351 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.82 65.0 6.56e-01 94.2% 82.9%
4203701 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.81 67.0 6.23e-01 91.3% 70.5%
3181301 101.1.2.569 ↗ alpha arrays › HTH › HTH › winged helix domain › PF28722 0.81 63.0 5.56e-01 80.8% 60.0%
4980135 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.81 60.0 5.99e-01 88.5% 74.1%
3286725 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.81 67.0 5.45e-01 98.1% 49.2%
4672256 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.81 69.0 6.68e-01 94.2% 81.7%
5005164 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.81 69.0 6.88e-01 94.2% 88.0%
4966558 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.80 60.0 6.56e-01 94.2% 95.3%
4373647 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.80 67.0 6.41e-01 94.2% 77.5%
4392375 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.80 67.0 6.63e-01 95.2% 84.5%
3481547 101.1.2.68 ↗ alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc34 0.80 65.0 5.68e-01 85.6% 64.7%
5000349 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.79 65.0 6.23e-01 94.2% 75.8%
4979490 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.79 66.0 6.27e-01 94.2% 76.7%
4983039 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.79 66.0 6.76e-01 94.2% 91.9%
4961270 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.79 68.0 6.79e-01 94.2% 90.5%
3549847 101.1.2.394 ↗ alpha arrays › HTH › HTH › winged helix domain › eWH_GTF3C1 0.79 61.0 4.04e-01 80.8% 22.4%
4487383 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.79 66.0 6.51e-01 91.3% 84.5%
4988082 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.78 51.0 5.97e-01 88.5% 97.1%
3840298 101.1.2.394 ↗ alpha arrays › HTH › HTH › winged helix domain › eWH_GTF3C1 0.78 60.0 5.58e-01 80.8% 64.6%
4284507 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.78 68.0 6.79e-01 94.2% 91.4%
5036311 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.78 65.0 6.62e-01 94.2% 91.0%
3200375 101.1.2.569 ↗ alpha arrays › HTH › HTH › winged helix domain › PF28722 0.78 60.0 4.35e-01 80.8% 31.3%
4933997 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.78 65.0 6.19e-01 95.2% 76.7%
3875839 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.78 64.0 6.24e-01 95.2% 79.1%
3483771 101.1.2.394 ↗ alpha arrays › HTH › HTH › winged helix domain › eWH_GTF3C1 0.78 55.0 5.73e-01 80.8% 80.0%
4945942 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.77 64.0 6.32e-01 94.2% 83.6%
3727442 101.1.2.569 ↗ alpha arrays › HTH › HTH › winged helix domain › PF28722 0.77 59.0 5.58e-01 81.7% 70.4%
4948099 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.76 68.0 6.71e-01 95.2% 90.0%
None — 0.76 61.0 6.27e-01 91.3% 88.0%
5003874 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.76 65.0 6.22e-01 94.2% 80.0%
5069274 101.1.2.135 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.76 61.0 5.90e-01 100.0% 76.5%
4982781 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.76 64.0 6.30e-01 94.2% 84.5%
5049515 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.76 67.0 6.47e-01 95.2% 85.2%
3927517 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.76 63.0 6.41e-01 94.2% 91.0%
3625612 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.76 62.0 6.38e-01 95.2% 91.0%
4173782 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.76 66.0 6.41e-01 95.2% 84.3%
3603693 101.1.2.145 ↗ alpha arrays › HTH › HTH › winged helix domain › HHH_4 0.76 57.0 4.79e-01 79.8% 48.2%
5073929 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.76 64.0 6.28e-01 95.2% 85.5%
3254841 101.1.2.198 ↗ alpha arrays › HTH › HTH › winged helix domain › ORC1_wHTH 0.75 64.0 6.41e-01 94.2% 88.6%
164542 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.75 58.0 5.60e-01 91.3% 73.0%
5077356 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.75 65.0 6.09e-01 92.3% 80.0%
4061942 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.75 63.0 5.90e-01 92.3% 74.4%
5011183 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.75 65.0 6.42e-01 95.2% 88.2%
4947062 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.75 55.0 5.71e-01 88.5% 83.2%
4971999 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.75 63.0 5.93e-01 91.3% 75.2%
4971711 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.74 64.0 5.95e-01 91.3% 75.2%
4956520 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.74 62.0 6.11e-01 94.2% 84.5%
5065308 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.74 68.0 6.45e-01 98.1% 85.8%
4997255 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.74 58.0 5.96e-01 94.2% 87.0%
3589018 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.74 54.0 4.46e-01 91.3% 44.6%
4314672 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.74 61.0 6.11e-01 98.1% 86.7%
4961841 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.74 63.0 5.83e-01 92.3% 73.8%
5055466 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.74 65.0 6.27e-01 94.2% 90.4%
5029327 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.73 65.0 6.18e-01 94.2% 85.8%
None — 0.73 52.0 3.56e-01 91.3% 21.1%
4966192 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.73 63.0 6.14e-01 94.2% 84.3%
4955909 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.73 63.0 6.24e-01 98.1% 88.2%
4990676 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.73 64.0 6.31e-01 95.2% 89.1%
5027116 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.73 64.0 6.20e-01 95.2% 87.0%
4325040 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.73 61.0 5.72e-01 92.3% 75.4%
4943364 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.72 64.0 6.05e-01 98.1% 81.3%
3926827 101.1.2.394 ↗ alpha arrays › HTH › HTH › winged helix domain › eWH_GTF3C1 0.72 65.0 4.03e-01 98.1% 48.8%
5050129 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.72 63.0 6.19e-01 94.2% 90.0%
5065786 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.72 64.0 6.06e-01 98.1% 82.5%
4008765 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.72 61.0 5.99e-01 90.4% 91.7%
3797519 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.72 65.0 4.01e-01 98.1% 50.7%
3788427 101.1.2.207 ↗ alpha arrays › HTH › HTH › winged helix domain › TFC3_eWH 0.71 54.0 5.49e-01 84.6% 83.0%
3238923 101.1.2.394 ↗ alpha arrays › HTH › HTH › winged helix domain › eWH_GTF3C1 0.71 64.0 4.00e-01 98.1% 53.8%
5081950 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.71 63.0 6.09e-01 98.1% 86.1%
4975513 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.71 64.0 6.28e-01 97.1% 91.8%
3237013 101.1.2.4 ↗ alpha arrays › HTH › HTH › winged helix domain › Forkhead 0.71 57.0 5.33e-01 95.2% 70.0%
3797700 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.70 58.0 5.91e-01 98.1% 93.0%
3827266 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.69 57.0 5.07e-01 94.2% 63.4%
3933222 101.1.2.111 ↗ alpha arrays › HTH › HTH › winged helix domain › RQC 0.68 57.0 5.02e-01 91.3% 68.4%
3413597 101.1.2.394 ↗ alpha arrays › HTH › HTH › winged helix domain › eWH_GTF3C1 0.68 59.0 4.06e-01 94.2% 47.0%
3400190 101.1.2.24 ↗ alpha arrays › HTH › HTH › winged helix domain › MAGE 0.67 55.0 5.12e-01 88.5% 71.5%
3468223 101.1.2.90 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_9 0.66 60.0 4.13e-01 100.0% 89.3%
3306699 101.1.2.517 ↗ alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc82, HTH_9, POLR3C_WHD 0.65 58.0 3.84e-01 96.2% 35.1%
4029392 375.1.1.179 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.64 58.0 4.70e-01 96.2% 81.6%
3488429 375.1.1.179 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.63 57.0 4.62e-01 96.2% 87.0%
4004118 375.1.1.179 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.63 57.0 4.65e-01 97.1% 84.9%
3730463 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 53.0 5.01e-01 95.2% 81.5%
5022021 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 48.0 4.71e-01 100.0% 84.3%
None — 0.57 41.0 2.86e-01 90.4% 21.1%
3986225 101.1.9.32 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › ANT 0.56 42.0 3.31e-01 85.6% 39.0%
3941757 101.1.9.32 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › ANT 0.55 40.0 3.76e-01 85.6% 61.5%
3602264 242.1.1.7 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.51 34.0 3.69e-01 85.6% 83.5%