←Back to structures

NC_047713.1__YP_009778498.1__HOQ62_gp058__00058

Bact-Vir

NC_047713.1__YP_009778498.1__HOQ62_gp058__00058

Identity

Accession:
NC_047713 ↗
Kingdom:
phage

Quality

65.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Atlauavirus› Synechococcus_phage_ACG-2014f_Syn7803C8

TaxID: 2790336

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 3-50
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qa1A02 3.30.70.2450 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 41.0 3.51e-01 72.9% 87.3%
3gqhA02 4.10.80.40 Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › succinate dehydrogenase protein domain 0.57 38.0 4.10e-01 100.0% 85.0%
1ryp200 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.56 43.0 2.93e-01 95.8% 63.5%
2byvE05 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.55 41.0 3.56e-01 83.3% 82.3%
5odnC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 39.0 3.12e-01 79.2% 70.6%
3ievA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 38.0 2.60e-01 75.0% 71.0%
3gw6A03 3.30.2460.10 Alpha Beta › 2-Layer Sandwich › Endo-n-acetylneuraminidase fold › Endo-n-acetylneuraminidase domain 0.54 34.0 3.25e-01 100.0% 52.6%
3f02B02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.54 40.0 3.28e-01 85.4% 62.0%
6pzjA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 33.0 2.39e-01 93.8% 20.3%
4nlcA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.53 41.0 2.77e-01 100.0% 53.8%
1fs7A01 1.10.1130.10 Mainly Alpha › Orthogonal Bundle › Flavocytochrome C3; Chain A, domain 2 › Flavocytochrome C3; Chain A 0.52 30.0 1.85e-01 100.0% 7.6%
3c7aA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 36.0 2.45e-01 75.0% 79.5%
2ztbA02 2.60.40.4280 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 39.0 3.28e-01 93.8% 59.6%
1dpgA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.50 38.0 2.43e-01 91.7% 71.5%
3pp9B00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.50 36.0 2.70e-01 91.7% 35.6%
8owfA01 2.60.40.290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 39.0 3.10e-01 91.7% 74.8%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3603146 2008.1.1.95 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DpnII 0.60 46.0 2.92e-01 91.7% 24.9%
4994655 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.59 46.0 4.65e-01 100.0% 90.0%
364260 70.4.1.3 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Peptidase_G2 0.57 38.0 2.69e-01 100.0% 20.9%
4639306 109.4.1.1255 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N, Cnd1 0.57 38.0 2.17e-01 72.9% 15.6%
3938317 389.1.1.0 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.56 35.0 3.76e-01 95.8% 75.0%
3623139 223.1.1.3 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › GAF 0.56 38.0 2.41e-01 70.8% 16.0%
4027980 3156.3.1.2 ↗ beta sandwiches › Cupredoxin-like › Surface antigen 1 (SAG1)-related-sequence (SRS) family › Surface antigen 1 (SAG1)-related-sequence (SRS) family › s48_45 0.54 41.0 2.87e-01 85.4% 72.1%
4297175 218.1.1.8 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.54 41.0 3.53e-01 91.7% 98.9%
4093401 4187.2.1.1 ↗ a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 › NAGPA 0.54 37.0 3.07e-01 75.0% 75.8%
4169399 304.14.1.1 ↗ a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR 0.54 38.0 3.28e-01 77.1% 97.5%
4002906 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.54 37.0 3.61e-01 75.0% 94.5%
3890428 109.3.1.96 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+Ank_2+Ank_4 0.54 36.0 2.53e-01 72.9% 22.8%
3806670 108.1.1.20 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_like 0.53 33.0 2.54e-01 95.8% 23.5%
4007581 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 31.0 3.14e-01 89.6% 48.0%
3972588 2498.1.1.31 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M90 0.51 39.0 2.66e-01 93.8% 70.2%
4139988 3294.1.1.1 ↗ alpha complex topology › FAS type I helical domain › FAS type I helical domain › FAS type I helical domain › FAS_I_H 0.50 31.0 2.02e-01 93.8% 11.2%
3231765 64.1.1.19 ↗ beta meanders › WW domain-like › WW domain › WW domain › FBA_2 0.50 34.0 2.75e-01 77.1% 63.3%