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NC_047714.1__YP_009778773.1__HOQ63_gp046__00046

Bact-Vir

NC_047714.1__YP_009778773.1__HOQ63_gp046__00046

Identity

Accession:
NC_047714 ↗
Kingdom:
phage

Quality

81.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Atlauavirus› Synechococcus_phage_ACG-2014f_Syn7803US26

TaxID: 2790346

Cluster

View cluster (22 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-71
PDB
Domain cluster: rep: CAKLQE020000001.1__CAH1066682.1__SAMEA5780037_00015__00015__D55-133
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ytlA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.77 55.0 5.99e-01 100.0% 90.0%
3c12A01 2.30.30.910 Mainly Beta › Roll › SH3 type barrels. › 0.76 48.0 5.16e-01 100.0% 76.5%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.75 55.0 6.17e-01 96.7% 100.0%
1m9sA04 2.30.30.170 Mainly Beta › Roll › SH3 type barrels. › 0.73 65.0 5.77e-01 100.0% 81.4%
1m9sA03 2.30.30.170 Mainly Beta › Roll › SH3 type barrels. › 0.71 64.0 5.94e-01 100.0% 88.0%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.71 51.0 5.06e-01 100.0% 72.3%
2f5kA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 54.0 5.83e-01 100.0% 100.0%
1jegA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 55.0 5.59e-01 100.0% 93.3%
5o99A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 53.0 5.36e-01 100.0% 90.0%
4epcA02 2.30.30.170 Mainly Beta › Roll › SH3 type barrels. › 0.67 60.0 5.69e-01 100.0% 93.0%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.66 43.0 4.40e-01 100.0% 68.3%
2efiA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 51.0 4.31e-01 100.0% 50.0%
4z88A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 57.0 5.65e-01 100.0% 96.9%
2kxcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 55.0 5.32e-01 100.0% 86.6%
3a54A01 2.40.50.340 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.64 47.0 4.13e-01 80.0% 74.4%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 51.0 4.78e-01 100.0% 71.1%
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 46.0 4.80e-01 100.0% 88.7%
2egeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 55.0 5.14e-01 100.0% 82.7%
1xg9A02 3.10.25.20 Alpha Beta › Roll › Methionyl-tRNA Fmet Formyltransferase; Chain A, domain 2 › 0.60 32.0 3.20e-01 80.0% 45.2%
6o5cA02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.59 50.0 4.72e-01 100.0% 84.2%
4amcA01 2.30.30.20 Mainly Beta › Roll › SH3 type barrels. › Aspartate carbamoyltransferase regulatory subunit, C-terminal domain 0.59 39.0 4.40e-01 70.0% 89.1%
6e55A01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.58 51.0 4.81e-01 100.0% 89.2%
7xpkA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.57 51.0 3.84e-01 100.0% 51.7%
2k5iA01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.57 50.0 4.53e-01 100.0% 76.2%
2jneA00 2.10.290.10 Mainly Beta › Ribbon › Rubredoxin-like › YfgJ-like 0.57 36.0 3.46e-01 100.0% 53.5%
3fvqA03 2.40.50.470 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 40.0 4.06e-01 90.0% 75.9%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 39.0 3.92e-01 73.3% 82.0%
2id0A02 2.40.50.640 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 42.0 3.95e-01 81.7% 89.0%
4omfB02 3.10.450.750 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 35.0 3.83e-01 93.3% 80.9%
3askA02 2.30.30.1150 Mainly Beta › Roll › SH3 type barrels. › 0.55 46.0 3.52e-01 100.0% 38.4%
2l3rA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.54 45.0 4.32e-01 100.0% 80.8%
1deuB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.53 45.0 3.01e-01 100.0% 32.2%
3zm6A02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.53 42.0 2.88e-01 90.0% 73.5%
2hbpA00 2.30.30.700 Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 0.52 36.0 3.53e-01 100.0% 68.2%
3rn5A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 44.0 3.84e-01 95.0% 94.6%
3n8hA02 3.30.1300.10 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Pantoate-beta-alanine ligase, C-terminal domain 0.52 39.0 3.69e-01 85.0% 98.7%
1ebdA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 42.0 3.50e-01 100.0% 98.3%
3o0hB02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 41.0 3.50e-01 100.0% 94.9%
ECOD (67)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4957888 4.1.1.458 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2098 0.83 56.0 5.64e-01 100.0% 70.0%
3230533 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.82 52.0 5.85e-01 100.0% 86.7%
4974669 4.1.1.458 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2098 0.79 54.0 4.65e-01 100.0% 46.7%
3519125 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 56.0 6.06e-01 100.0% 90.0%
4054649 4.1.1.86 ↗ beta barrels › SH3 › SH3 › SH3 › GW 0.75 67.0 6.25e-01 100.0% 93.3%
3972820 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 64.0 5.82e-01 100.0% 81.2%
3293107 4286.1.1.1 ↗ beta complex topology › At5g01610-like › At5g01610-like › At5g01610-like › DUF538 0.71 41.0 3.29e-01 93.3% 28.3%
3989970 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 62.0 6.04e-01 96.7% 89.2%
5034724 4.1.1.482 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4314 0.71 56.0 5.77e-01 95.0% 94.5%
4339767 6148.1.1.1 ↗ few secondary structure elements › N-terminal domain of EpCAM › N-terminal domain of EpCAM › N-terminal domain of EpCAM › EpCAM_N 0.69 40.0 4.63e-01 98.3% 85.0%
3730229 4.1.1.102 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.69 54.0 5.00e-01 100.0% 68.0%
4058919 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.69 46.0 4.86e-01 100.0% 84.0%
3483375 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 60.0 5.66e-01 100.0% 84.0%
3490689 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.68 57.0 5.43e-01 100.0% 78.6%
3801719 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.68 56.0 5.37e-01 100.0% 78.6%
3599257 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 56.0 5.47e-01 100.0% 84.6%
3678390 4286.1.1.1 ↗ beta complex topology › At5g01610-like › At5g01610-like › At5g01610-like › DUF538 0.67 39.0 3.20e-01 93.3% 29.6%
3170922 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.67 54.0 5.25e-01 98.3% 79.4%
4013671 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 55.0 5.73e-01 100.0% 100.0%
1386398 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.67 54.0 5.08e-01 100.0% 73.3%
4020558 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 53.0 5.26e-01 100.0% 84.6%
158911 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.65 57.0 4.89e-01 100.0% 64.9%
5055039 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.65 57.0 4.32e-01 100.0% 42.1%
4045126 2.4.1.3 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2,OB_MalK 0.64 44.0 3.49e-01 73.3% 86.9%
3470815 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.64 56.0 5.36e-01 100.0% 85.7%
397140 2.2.1.0 ↗ beta barrels › OB-fold › Bacterial enterotoxins › Bacterial enterotoxins 0.63 47.0 4.15e-01 80.0% 76.1%
3603847 4.1.1.144 ↗ beta barrels › SH3 › SH3 › SH3 › Ago_PAZ_arc 0.63 58.0 4.84e-01 100.0% 74.0%
1826883 4.1.1.83 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_6 0.63 55.0 5.00e-01 100.0% 93.9%
3692073 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.63 50.0 4.85e-01 100.0% 78.6%
3910605 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.63 56.0 5.10e-01 100.0% 75.0%
4194151 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.62 48.0 4.24e-01 100.0% 56.7%
4588355 2003.1.2.13 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.62 38.0 2.47e-01 91.7% 13.0%
4984041 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.62 52.0 4.95e-01 100.0% 85.3%
3589954 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.61 53.0 4.99e-01 100.0% 85.3%
4947702 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 52.0 4.93e-01 100.0% 86.7%
4033110 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.61 52.0 4.90e-01 100.0% 84.0%
4382135 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.61 44.0 3.67e-01 78.3% 83.6%
5040422 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.61 51.0 4.86e-01 100.0% 85.3%
None — 0.60 46.0 2.71e-01 83.3% 29.7%
3622911 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.59 49.0 4.71e-01 100.0% 82.9%
3507003 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 50.0 4.71e-01 100.0% 84.0%
3281271 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.59 49.0 4.35e-01 100.0% 63.3%
4959077 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 51.0 5.02e-01 100.0% 98.4%
2499682 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.59 51.0 4.74e-01 100.0% 82.1%
3687350 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 44.0 4.57e-01 100.0% 89.1%
3281618 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.59 50.0 4.33e-01 100.0% 69.0%
5055172 3699.1.1.1 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.58 44.0 4.53e-01 96.7% 89.1%
4001870 2003.1.2.17 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Amino_oxidase 0.57 37.0 2.72e-01 91.7% 22.9%
3508531 809.2.1.0 ↗ a+b two layers › BLIP-like › BT0923-like › BT0923-like 0.57 40.0 4.26e-01 96.7% 90.0%
4405469 4.1.1.248 ↗ beta barrels › SH3 › SH3 › SH3 › CABIT 0.57 48.0 4.21e-01 100.0% 63.2%
3236706 219.1.1.4 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C2 0.56 50.0 3.26e-01 100.0% 38.8%
4420340 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 39.0 3.98e-01 100.0% 76.7%
3688421 219.1.1.4 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C2 0.56 48.0 2.95e-01 100.0% 27.1%
3924808 719.2.1.0 ↗ beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like 0.55 45.0 4.17e-01 93.3% 82.5%
3787112 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 46.0 4.25e-01 100.0% 76.2%
3647467 4286.1.1.1 ↗ beta complex topology › At5g01610-like › At5g01610-like › At5g01610-like › DUF538 0.54 38.0 3.14e-01 100.0% 39.1%
3314585 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.54 45.0 2.98e-01 93.3% 27.0%
4307219 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.53 39.0 4.07e-01 95.0% 90.9%
3593477 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 47.0 3.47e-01 100.0% 50.6%
4986017 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.52 41.0 3.95e-01 95.0% 75.7%
4887360 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.52 35.0 3.56e-01 93.3% 70.0%
3399366 9.14.1.3 ↗ beta barrels › Lipocalins/Streptavidin › Uncharacterized protein YLR301W › Uncharacterized protein YLR301W › DUF7042 0.51 43.0 3.42e-01 100.0% 98.6%
None — 0.51 41.0 2.67e-01 98.3% 34.5%
4321106 5.1.4.307 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF29630 0.51 43.0 2.67e-01 98.3% 34.9%
4447285 331.1.1.6 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › DUF3378 0.51 36.0 3.49e-01 76.7% 78.6%
4402384 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.50 40.0 3.10e-01 96.7% 69.7%
1567587 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.50 38.0 3.66e-01 90.0% 70.4%