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NC_047714.1__YP_009778819.1__HOQ63_gp092__00092

Bact-Vir

NC_047714.1__YP_009778819.1__HOQ63_gp092__00092

Identity

Accession:
NC_047714 ↗
Kingdom:
phage

Quality

89.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Atlauavirus› Synechococcus_phage_ACG-2014f_Syn7803US26

TaxID: 2790346

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-80
PDB
Domain cluster: rep: MH744418.1__AYD81209.1__SEA_JUSTBECAUSE_40__00040__D10-82
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1krlA00 6.20.50.130 Special › Other non-globular › N-terminal domain of TfIIb › 0.68 31.0 4.11e-01 81.0% 79.5%
4qakA00 3.90.1140.10 Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase 0.61 49.0 3.91e-01 91.1% 99.4%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.59 44.0 3.54e-01 82.3% 95.8%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.57 45.0 4.35e-01 87.3% 98.9%
4hlbA00 3.30.70.2960 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 41.0 3.91e-01 81.0% 80.0%
3zq5A03 3.30.450.270 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain 0.55 36.0 2.95e-01 100.0% 34.6%
3kvpA00 6.20.140.10 Special › Other non-globular › Immunoglobulin-like › 0.54 30.0 3.68e-01 72.2% 97.7%
4ehoB03 3.30.450.270 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain 0.53 36.0 2.89e-01 73.4% 35.8%
3nqpA00 1.25.40.390 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.52 39.0 2.43e-01 79.7% 39.5%
1ca1A02 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.52 41.0 3.63e-01 87.3% 85.8%
4hnvB01 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.52 38.0 2.57e-01 78.5% 50.6%
2iciA01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.52 39.0 3.34e-01 86.1% 82.6%
4iwxA03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.52 45.0 4.03e-01 96.2% 92.8%
1w96C04 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.51 42.0 2.91e-01 88.6% 43.4%
3wqbA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 40.0 3.22e-01 87.3% 78.3%
3vpbB03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.51 44.0 3.93e-01 96.2% 92.9%
3cwfA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 36.0 3.37e-01 78.5% 94.4%
2d4oA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 36.0 3.16e-01 75.9% 52.7%
1z2nX02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.50 38.0 3.41e-01 79.7% 67.0%
3hi0A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.50 36.0 3.28e-01 78.5% 79.5%
1mkiA01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.50 36.0 2.89e-01 77.2% 75.6%
2d8bA01 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.50 41.0 3.42e-01 93.7% 51.4%
4k6lG00 3.90.210.10 Alpha Beta › Alpha-Beta Complex › Heat-Labile Enterotoxin; Chain A › Heat-Labile Enterotoxin, subunit A 0.50 39.0 2.87e-01 86.1% 70.5%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4079239 264.1.1.4 ↗ beta barrels › LigT-like › LigT-related › LigT-related › CPDase 0.76 57.0 4.26e-01 79.7% 99.0%
5059796 4326.1.1.0 ↗ a+b two layers › ERH-like › ERH-like › ERH-like 0.69 46.0 4.93e-01 75.9% 78.3%
4031839 264.1.1.9 ↗ beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 0.65 48.0 3.82e-01 81.0% 99.4%
4603837 264.1.1.15 ↗ beta barrels › LigT-like › LigT-related › LigT-related › DUF1045 0.64 47.0 3.50e-01 79.7% 98.6%
3251163 245.1.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.62 38.0 3.67e-01 83.5% 54.4%
3233020 264.1.1.7 ↗ beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS 0.62 46.0 3.58e-01 81.0% 98.4%
3423236 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 44.0 4.49e-01 84.8% 78.7%
3295157 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.61 44.0 3.05e-01 75.9% 43.6%
3289401 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.61 47.0 3.98e-01 82.3% 52.3%
4680886 69.1.1.14 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint_2 0.61 44.0 3.48e-01 75.9% 40.0%
4632256 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 40.0 4.17e-01 73.4% 94.7%
4972136 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.57 41.0 2.91e-01 74.7% 86.8%
3972650 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.57 42.0 3.87e-01 81.0% 100.0%
5024082 230.4.1.2 ↗ a+b two layers › T-fold › ApbE-like › ApbE-like › AbpE_bact 0.56 42.0 3.77e-01 83.5% 56.7%
3722266 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.55 42.0 3.73e-01 86.1% 97.6%
1066931 224.1.1.1 ↗ a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF 0.54 43.0 3.61e-01 86.1% 55.1%
3721305 245.1.1.0 ↗ a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 0.54 40.0 3.64e-01 84.8% 59.2%
4987637 206.1.3.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.54 48.0 2.94e-01 100.0% 23.7%
3286213 327.6.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Fe-S cluster assembly (FSCA) domain-like › Fe-S cluster assembly (FSCA) domain-like 0.54 38.0 3.37e-01 73.4% 88.7%
2056874 206.1.3.10 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › CPSase_L_D2 0.53 46.0 3.56e-01 96.2% 65.0%
None — 0.53 43.0 2.60e-01 88.6% 21.1%
3669363 11.1.1.389 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › EDR2_C 0.53 44.0 3.73e-01 91.1% 77.7%
None — 0.53 43.0 2.57e-01 88.6% 20.2%
4142173 206.1.3.19 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › Dala_Dala_lig_C 0.52 44.0 3.15e-01 94.9% 51.4%