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NC_047714.1__YP_009778830.1__HOQ63_gp103__00103

Bact-Vir

NC_047714.1__YP_009778830.1__HOQ63_gp103__00103

Identity

Accession:
NC_047714 ↗
Kingdom:
phage

Quality

95.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Atlauavirus› Synechococcus_phage_ACG-2014f_Syn7803US26

TaxID: 2790346

Cluster

View cluster (7 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-51
PDB
Domain cluster: rep: NC_006883.2__YP_214339.1__PSSM2_107__00106__D5-50
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3nuhB02 3.30.300.370 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › 0.75 66.0 4.92e-01 100.0% 95.0%
1ywlA00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.67 49.0 3.89e-01 77.6% 79.2%
7o4xA01 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 54.0 4.36e-01 95.9% 84.8%
4e6zA01 3.40.1350.100 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.64 52.0 4.22e-01 100.0% 52.3%
1ln0A00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.64 53.0 4.44e-01 100.0% 66.3%
3lnpA02 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.63 51.0 3.15e-01 89.8% 31.4%
3vpbA02 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.63 53.0 4.79e-01 98.0% 69.6%
1vbkA01 3.30.70.1510 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › THUMP domain-like 0.61 46.0 3.97e-01 83.7% 56.6%
3b49A00 3.20.80.10 Alpha Beta › Alpha-Beta Barrel › Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A › Regulatory factor, effector binding domain 0.60 49.0 3.38e-01 100.0% 55.4%
3kdrA03 3.30.1120.70 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.60 44.0 4.42e-01 79.6% 86.0%
5tipA02 2.70.9.20 Mainly Beta › Distorted Sandwich › Adenovirus Type 2 Hexon; domain 4 › Major capsid protein Vp54 0.60 49.0 3.31e-01 100.0% 32.6%
2v50D07 3.30.70.1440 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain 0.60 50.0 4.14e-01 100.0% 95.8%
2vvfA01 2.60.120.730 Mainly Beta › Sandwich › Jelly Rolls › 0.59 48.0 3.60e-01 100.0% 55.3%
5vmzA03 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.58 43.0 4.62e-01 98.0% 100.0%
5oc1A02 3.30.560.10 Alpha Beta › 2-Layer Sandwich › Glucose Oxidase; domain 3 › Glucose Oxidase, domain 3 0.56 44.0 2.75e-01 87.8% 47.4%
2vvfA02 2.60.120.730 Mainly Beta › Sandwich › Jelly Rolls › 0.56 44.0 3.47e-01 100.0% 51.6%
1rtzA00 3.30.70.560 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK 0.55 43.0 3.28e-01 100.0% 63.8%
4r7eA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.55 45.0 4.07e-01 95.9% 66.7%
3vk6A01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.54 42.0 4.08e-01 100.0% 76.3%
1x4rA01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.53 42.0 3.79e-01 100.0% 83.5%
5xbfA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.52 43.0 3.68e-01 100.0% 70.1%
1vwxS01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.50 41.0 3.75e-01 100.0% 85.9%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3999651 904.1.1.14 ↗ few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › SNAPC3 0.67 54.0 4.98e-01 100.0% 69.2%
3397461 304.11.1.0 ↗ a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase 0.66 54.0 4.63e-01 95.9% 98.8%
4957337 304.28.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.64 50.0 4.19e-01 85.7% 56.5%
3579956 320.1.1.0 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain 0.62 49.0 4.35e-01 85.7% 72.9%
4242475 304.28.1.4 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › SecD_1st 0.60 45.0 3.91e-01 83.7% 56.2%
4083360 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.59 47.0 3.18e-01 91.8% 68.4%
3728688 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.59 46.0 2.63e-01 87.8% 43.9%
4011808 304.12.1.0 ↗ a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 0.58 43.0 3.44e-01 87.8% 45.0%
4994350 7523.1.1.0 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.57 43.0 3.17e-01 87.8% 39.3%
3756436 304.9.1.120 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › DUF4523 0.57 44.0 3.83e-01 95.9% 85.6%
3336122 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.56 46.0 3.47e-01 93.9% 62.4%
3689809 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.56 41.0 4.24e-01 98.0% 97.8%
4557176 244.1.1.9 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › GMC_oxred_C 0.55 42.0 2.81e-01 85.7% 50.0%
3167141 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.54 46.0 4.28e-01 100.0% 75.4%
3998356 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.53 41.0 4.17e-01 98.0% 100.0%
4163390 244.1.1.9 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › GMC_oxred_C 0.53 42.0 2.93e-01 98.0% 74.0%
3718927 11.1.1.703 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_CFAP65__9th 0.52 44.0 3.05e-01 100.0% 43.4%